Rickettsiales bacterium Ac37b: NOVO_07065
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Entry
NOVO_07065 CDS
T03234
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbt
Rickettsiales bacterium Ac37b
Pathway
rbt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NOVO_07065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbt03400
]
NOVO_07065 (mfd)
Enzymes [BR:
rbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NOVO_07065 (mfd)
DNA repair and recombination proteins [BR:
rbt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NOVO_07065 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIL65759
UniProt:
A0A077FP95
LinkDB
All DBs
Position
complement(1403209..1406700)
Genome browser
AA seq
1163 aa
AA seq
DB search
MFQKNLFIQNNQQLICCPVASNASNCVLAAISIDNPTKNILYIVNDEVELSSIVKELNFF
IAGTKIITLPGWDSLPYDRVSPSKIVSNSRIQALYSIVAAENRVILVTTLNSMIQYTVPP
EMLIDMSFSIRQGLELKRDDFIDRLLEYGFLKVSITSEAGEFSVRGSIIDICLPNEEQGI
RLDFFGNTIESIKVFDLITQKSDKILKEITILPVSEVILNSTSIKNFTQNYLKLFGINKS
DLLYEATLTGQRYIGVEHWLPLFYKDVATIFDYLKFDIVIHDSNFWTAYEERKNLIHEYY
TARLESIKNVMKDMIYNAVPPELVWINKTELESKLLSKSVVILDQFLHTDSKNVFTLFIN
KLPNFLLQARVEEKPIYDILHSYIKAIQLSNKKLIICCTTEGSRQRISHILQSNNITICN
IELWSQVQKLDVNIVGITVYPLSQGFELEKYVLISEQDLLGERIRPRRNSRKRLENIINE
TVSFAVDELVVHRDYGIGRFIGLETVDVLGIKHDFLSLVYEGGDKLYIPVENIELLSRYG
SDNEASVLDKLGGTSWQIRKSRLQNRIKLAAEELLKTAAERELKTVDSFNITSGMYDEFC
AKFPYPETDDQLSAIREIEEDLSLGKPMDRLVCGDVGFGKTEVALRAAFIVALAENIVKP
QVAVIVPSTLLARQHYLTFKERFAGFPIKIALLSRMVPEKEITLVKHDLAEGNINIIIGT
HAILNKNIEFKNLQLIIIDEEHHFGVAQKERLKQLRADVHILTLSATPIPRTLQMSLVGI
KKLSLIATPPIDRIAVRTFIMPFDSVVIKEAILREYNRGGKIFYVCPKIADLTEIHNILK
DLVPEIRMVVAHGQMPASRLDDIMNAFCNNEYDLLLSTSIVESGLDIASANTIIVHRADI
FGLAQLYQLRGRVGRGKIRAYAYLTLPPKKILSKIALARLEVMQTLDSLGAGFSLASYDM
DLRGFGNLVGEEQSGHIKEVGVELYQDMLKEAVEALIQDKNITKSELDKNESGSNTFVPQ
MNLGLSVLIPESYIPDLSLRLGIYKRASTLENEQEIEEFALGLIDRFGDLPNEVEHLLTI
LKLKQLCYKFNIEKIDSGPQAVVIAFKDNICHNPEELLNYIRKNQIKLRADQKLLLPIKI
NDAEERLKQLIIKLKELSSIITI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgttccaaaaaaacttatttattcaaaataaccaacagttaatttgttgtcctgttgca
tctaatgctagtaattgtgtacttgctgctatttcaatagataatcctacaaaaaatata
ctatatatagtaaatgatgaagtagaactctctagtattgttaaagaattaaattttttt
atagctggcactaaaattataactcttccaggctgggattcgctgccatatgatcgagtg
tctccaagtaaaattgtttccaatagtagaattcaggctttatacagtatagtagctgct
gagaatagggtaatcttagtaactactttaaatagtatgatccaatatacggtgcctccg
gaaatgctgattgatatgagtttttctataaggcaaggtttagaattaaagcgcgatgat
tttatcgatagattattagagtatggttttttaaaagtttcaattacgagtgaagcggga
gagttttcagtacggggcagcattattgatatttgtttaccaaatgaagagcaaggaata
cgtttagatttttttggtaataccattgaatcaataaaagtttttgatcttattacccaa
aaaagtgataaaatattaaaagaaattactatattacctgtgagtgaagtaatattaaat
tccacctccattaagaattttacgcaaaattacctgaaattatttggtattaataaatct
gatcttttatatgaagctaccctcactggtcagagatatattggtgttgaacattggtta
ccgttattttacaaagatgtcgccacgatatttgattatttaaaatttgatatagtaatt
catgatagtaatttttggaccgcttatgaagaaagaaaaaatttaattcatgaatattac
actgcacgtctagaaagcatcaaaaatgttatgaaagatatgatatataatgctgtgcct
ccggaactagtatggataaataagactgaattagaaagtaaattattatcaaaatcagta
gtaatattagatcaattcttgcacactgatagcaagaatgttttcactctttttattaat
aaactccctaattttttattacaggcgcgggtagaagaaaaacctatttatgacatatta
cattcctatattaaagctattcagttatccaataaaaaattaataatttgttgcactact
gaaggttcaagacaaagaatatcccatatactacaaagtaataatataactatttgtaat
atagaattatggagtcaagtacagaaattagatgttaatatagttgggattacggtgtat
cctctatcacaaggatttgagctagaaaaatatgttttaatcagtgagcaagatttgctt
ggagaacgtataaggcctcggcgtaactctcgtaaaagactggaaaacattattaatgag
actgtttcttttgctgttgacgagttagtagtacatcgtgattatggtatagggcgtttt
atagggctggaaacagttgatgtgcttggtattaaacatgattttttatctttagtttat
gagggcggagataaactctatataccagttgagaatattgaacttttgagtaggtatgga
tcagataatgaagcatcggttcttgataagttgggtggtacatcatggcagatacgcaaa
tccagattacaaaatcgtattaaattagctgcagaagaattattaaaaacagctgctgaa
agagaacttaaaactgtagatagttttaatataaccagtggtatgtatgatgagttttgt
gcaaaattcccctatccagaaactgatgatcaattatcagcaattagagagatagaagaa
gatctgtctttaggtaaacctatggatagattagtatgcggagatgtaggatttggtaaa
actgaagttgcactgcgagctgcgtttattgtagccctagctgaaaatatagtaaagcca
caggttgctgtaattgtaccaagtactttgcttgctagacaacattatttaacatttaag
gagcgctttgcagggtttcctataaaaatagcattactttccaggatggttcctgaaaaa
gagattactcttgttaagcatgatcttgcagagggtaatattaatatcattataggtaca
catgccatattaaataaaaatattgaatttaaaaatctgcaattgatcattatagatgaa
gaacaccattttggtgtcgctcagaaagaacggttaaaacagctacgtgctgatgtacat
attttaaccttatctgcaactcctatacctcgtaccttacaaatgtctttagttgggata
aaaaaattaagcttaattgcaactcctcctatcgatagaatagctgttagaacatttatt
atgccgtttgattcggtagtaattaaagaagcaattttaagggagtataacaggggagga
aagatattttatgtttgtcctaagatagctgatttaactgaaatacataatatactaaaa
gatttggtacccgaaattaggatggtagtggcgcatggacagatgcctgcaagtagactt
gatgatataatgaatgcattttgtaataatgaatatgacctcttattatccacatcaatt
gttgagtctggtttggatattgcaagtgctaatacgatcattgttcatagggcagatatt
tttggattggcacaattataccaattacgtggtagggtaggcagaggaaaaatacgtgct
tatgcatatctcaccttgcctcctaaaaaaattctctctaaaattgctttagctaggctt
gaagttatgcaaacgctagactctcttggggctgggttttccttagcgagctatgatatg
gatttacgtggttttgggaatttagttggagaggagcaatctggacatattaaggaagtt
ggagttgaactatatcaagatatgttaaaagaagctgttgaagctttaatccaggataag
aacattacaaagtctgaattagataaaaatgaaagcggtagcaacactttcgttcctcaa
atgaacttaggattatcggtgttgataccagaaagttatataccagatttatcacttagg
ctgggcatatataaaagggcatcaactttagaaaatgaacaagagatagaagagtttgct
cttggactaatagatcgctttggcgatttgcctaatgaagtagaacatttattaactata
cttaaattaaaacaattatgttacaaattcaatatagaaaaaatagattcaggaccacaa
gctgtagttatagcatttaaagataatatttgtcataatcctgaggagttattaaattat
attaggaaaaatcagataaaattacgtgcagatcaaaaactattattacctataaagatt
aatgatgcggaagaaagattaaaacaattaattatcaagcttaaagaactgagttccata
ataactatctga
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