Roseiflexus castenholzii: Rcas_0060
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Entry
Rcas_0060 CDS
T00585
Name
(GenBank) transcriptional activator domain
Organism
rca
Roseiflexus castenholzii
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BTAD
HEAT_2
Trans_reg_C
HEAT
AAA_16
AAA_22
AAA
TPR_12
AAA_30
AAA_25
HEAT_EZ
Tax
Cnd1
AAA_19
HEAT_PBS
Motif
Other DBs
NCBI-ProteinID:
ABU56198
UniProt:
A7NFH6
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All DBs
Position
complement(72281..75718)
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AA seq
1145 aa
AA seq
DB search
MRTLNHSIESSSQSRGAQALLPLKLLPPPLRDGVLLRPDLQALLAEVRLQPLTLVVAPAG
YGKTTLIAQWAQELGRTGAPVSWLTLDVGERDPALFLAYLIRAFQSAFPVLGQDAARVLS
SAANLERDWPLVAGALCSDLQRHVLSAAFLFLDDLHQVIDSSVIGQILGYLLRAAPPSLH
VVIASRREVTIPPLARLRMEGRVVDVRQSDLHLNLEQARQLLAIQGVALSDEELTMLLAR
TEGWALSLQLAARVLAEQPVERRSEFVAALGGGSEQLLAYLATEVLADLPADVLEFLRLA
ALPPHFDADLLADALLREDVPYLLRRVRALGLPLTPIDAQGDRLRFHPLWRELLVRDIHE
IVDDETLAAFHRRFGRQFELRGELEEALDHYARANSIDDLERALLERAWPLLNSPRRDTV
RRWIEQIPAERRDTNPELLYMWGYSLIVANPPLAAQVIERAADLFRRAEAHARELRAYSD
LAALLFWQARPADFAAVCVRAIRAANQARDAWSRGAALTCAAAMLSIRGRLSAALRVARH
ATAHPLNPAWHWLLAMIVTSIHNQLGRPADALAVVDEALQLTQIDSNDRMRQNLLRQRAM
ALYLLGQHTEAIALALDAHRYLLDYYRDGTAGVSAAQLALLLSLQGRLDEAAIYIAQARA
AFHDLGALAPLASLQAIELYSMLRRGQAARAAAAAAAFVRRLDEVEGIAPDLRLRLLLAI
VLGEAGERRQALDVLKTTVQQMQHRGYRLFLASACLYGAYLAGTCSEAELRDVWLRVGWT
IAGEDRCRFLPMMPAEALRDVAAAALRAGIGGDAPGRVLSHHLGNETVELLQDMLSDSSP
EVRARAARLLGDVGTAAAYPVLRALIKDRNPAVRQIAEESLNRLVYRPPYVLRIRMLGAF
TVWRGDHEIRDREWRSSKARQLLQLLLTERGRSLSREQVVDALWPDMEIDAATNNLRVTI
NRLSKALEPDRPDGAPSAFLVQQGDTYAFNTASDHRIDVVEFVDAIAEGRHADQRGQRAT
AIAAYRRAVQLYGGPYLPDTMYEDWTVVERERLALAFIEAALRLGALLLEEGAVHEAIGL
GWRVIEIDQTQEEAYRLLMRAHAALGERSTALRLYTRCVSVLQNELGITPLPETTALYQT
LRDLR
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcgtacactcaaccacagcatcgaatccagcagtcaaagccgtggcgcgcaggcgctc
ttgccgctcaaactgcttcccccgcccctgcgcgatggggtgctgcttcgtcccgatctc
caggcattgttggcagaagtgcggttgcagccgctgactcttgtggtagcgccggccggg
tatggcaaaacaacgctgattgcgcaatgggcgcaagaattgggacgcaccggcgcgccg
gtctcctggttgacgctcgatgtcggtgaacgcgacccggcattgtttctggcgtacctg
atccgcgcgtttcagtcggcttttcccgtcctcggacaggatgcggcgcgggtgctgtcg
agcgctgcgaatctcgaacgtgactggcccctggttgccggggcgctgtgcagcgatttg
cagcgtcatgtgctgtcggcagcctttctgttcctcgatgatctgcatcaggtgatcgac
tcgtccgtcattgggcagattctcggctacctcctgcgcgccgcgccgccttccctgcat
gtggtgattgcatcacggcgcgaggtgaccattccgccgctggcgcgcctgcgcatggag
gggcgggttgtcgatgtgcgccagtctgatcttcatctgaacctggagcaggcgcgccag
ttgctcgccattcagggtgtggcgctctcggatgaggaactcacgatgctgctggcgcgc
accgaagggtgggcgttgagcctgcaacttgctgcccgtgtgcttgcggaacagccggtt
gagcgccgtagcgagtttgtagccgcattgggcggtggaagtgagcaattgctggcgtat
cttgcgactgaggtgctcgccgatcttcccgcagatgtgctcgagtttctccgcctggct
gcgcttccgccccatttcgacgccgatctgctggcggatgcgctgttgcgggaagatgtc
ccgtacctgttgcgtcgtgttcgcgccctgggtctgccgctgacgccgatcgatgcgcag
ggtgatcgcttacgttttcatccgctctggcgcgaattgctggtgcgcgatattcacgag
atcgtggacgatgaaacgcttgctgcattccatcgtcgtttcggtcggcagttcgagctt
cgcggcgaactcgaagaagcgctcgatcattatgcccgcgccaacagcatcgacgatctc
gaacgcgctctgctcgaacgcgcctggcccctgctcaattcgccgcgccgtgatactgtg
cggcgctggattgaacagataccggcagaacggcgcgataccaaccccgaattactgtat
atgtgggggtacagcctgatcgtcgccaatccgccgcttgcagcgcaggtgatcgagcgc
gctgccgacctgttccgccgggcagaggcgcatgcgcgcgaattgcgcgcgtactccgat
ctggcagcgctcctcttctggcaggcgcggcctgccgatttcgccgctgtgtgtgtgcgc
gccatccgtgctgccaatcaggcgcgtgatgcctggtcgcgcggcgcagcgctgacgtgc
gctgccgccatgctgtcaattcgcgggcgcctctctgctgcgcttcgggttgcgcgccat
gccactgcgcatcccctcaatccggcgtggcactggttgctggcaatgatcgtcacgtcg
atccacaatcagcttgggcgccccgctgatgcgctggcagtcgtcgatgaagctctccaa
ctgacgcagatcgacagcaacgaccgcatgcgacagaatctcctgcgtcagcgggcgatg
gcgctctatctgctcggccagcacactgaggcgattgctctggcgctggacgctcatcgt
tacctgttggactactatcgtgacggcacggctggcgtgagcgctgcacaactggcgttg
cttctctcattgcaggggcgtctcgatgaagcggcgatctacattgcgcaggcgcgcgcc
gcctttcatgaccttggcgcgctggcgccgctcgcgtcgttgcaagccatcgaactgtac
agtatgctgcggcgtggtcaggcggcgcgcgccgccgccgccgccgccgcgtttgtgcgc
cggctcgatgaggtggaaggcattgcgcctgatctgcgtctgcgcctcctgcttgctatt
gtgctcggtgaggcgggtgagcgccgccaggcgctcgacgtgctgaaaacgaccgttcaa
cagatgcagcatcgtggctatcggctgtttctggcgtccgcctgcctctatggggcgtat
cttgccgggacgtgcagtgaagcggagttgcgcgatgtctggctccgtgtcggatggacc
attgccggagaggatcgctgccgtttcctccccatgatgcctgccgaagccttgagagat
gtggcagcggcggcgttgcgcgctgggattggcggagacgcacctggacgtgttctatcg
catcatctcggcaatgagacggtggaactcttgcaggacatgttgagcgactcgtcgcca
gaggtgcgtgcgcgggcggcgcggttgcttggcgatgttggcacggcagccgcctatcca
gtattgcgcgcgttgatcaaggatcgcaatccggcggtgcgccagatcgccgaagagtcg
ctcaaccgcctggtgtatcgccctccatacgtgttgcgcattcgtatgcttggcgccttc
accgtctggcggggcgaccacgagattcgtgaccgtgaatggcgcagcagcaaggcgcgc
cagttgttgcagttgctgctgaccgaacgcggacgatccctttcgcgcgaacaggtcgtt
gatgcgctctggcccgatatggagatcgacgcagcgaccaataatttgcgtgtcacgatc
aatcgtttgagcaaggcgcttgagcctgatcgccccgacggcgcgccatctgcttttttg
gtgcagcagggtgacacgtatgccttcaataccgccagcgatcaccggatcgatgttgtt
gagttcgtcgatgcgattgctgaaggacgccacgccgatcagcgtggtcagcgcgccaca
gccatcgcggcctaccggcgcgcggttcagttgtatggcggtccctatctgccggatacc
atgtacgaagactggacggtcgtcgaacgtgaacggctggcgctggcattcatcgaggcg
gcgcttcgcctgggcgcgcttctcctcgaggaaggcgccgttcacgaggcgatagggttg
ggatggcgcgtcatcgagatcgatcaaacccaggaagaagcgtaccgcctgctgatgcgc
gcgcacgctgcgctcggtgagcgcagcacagcgctgcgcctgtatacgcggtgcgttagt
gtgttacagaatgaattgggcatcacgccattgcccgaaacgaccgcgctctaccagacg
ctgcgcgacctccggtag
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