KEGG   Ricinus communis (castor bean): 8275235Help
Entry
8275235           CDS       T01087                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03030  DNA replication
rcu03410  Base excision repair
rcu03420  Nucleotide excision repair
rcu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    8275235
   03410 Base excision repair
    8275235
   03420 Nucleotide excision repair
    8275235
   03430 Mismatch repair
    8275235
Enzymes [BR:rcu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     8275235
    6.5.1.6  DNA ligase (ATP or NAD+)
     8275235
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     8275235
DNA replication proteins [BR:rcu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    8275235
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     8275235
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     8275235
   NER (nucleotide excision repair)
    Other NER factors
     8275235
   MMR (mismatch exicision repair)
    Other MMR factors
     8275235
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 8275235
NCBI-ProteinID: XP_002523716
LinkDB All DBs
Position
Un
AA seq 796 aa AA seqDB search
MLTLRSCNCLRFISFPYHHHHRHHHHSKSLSSSFLIFCNKSSYFHSTLPLFIKSSFKSTM
STPRSAFDVLMKKSAANKKSQSSSPKKRKSPDSQIAPKTLINSTQSLQQQPPNTIQHKET
PQKPQDSSLSLGEEKKVDTAKKQRLAIAEMKGKIKSLMKNPKDFDPNEVVYWEKGENVPF
IFVCSAFEYLEDEKEKGRGNITNVACNMLRSVMSTTPDDLLALVYLLANRVAPAHEGVEL
GIGEAMIIKALAEAFGRTEKQVKKEYEGTGDLGRVAQASRSSQSMMRRPEPLTVSKVFNT
FQLIAKDSGKDSQDKKKNRIKALLVAATDCEPQYLIRLLQGKLRINLAGQTLLAALGQAA
VFSENHCTVPSNIQSPLDEAAKIVKQVYSVLPVYDRIVPALLNDGVWNLPKTCSFTPGVP
VGPMLAKPAKSVTEIVEKFQGKFTCEYKYDGERAQIHFLENGSVEIYSRNAERNTGKYPD
VVVAISRSKKSSVKSFVLDCEIVAYNRGEKKILPFQILSTRPRKNVVMSDIKVDVCIYAF
DMLYLNGKPLIEEQLEDRRKLLYDSFEEDPEHFQFATAITSNDLEEIQKFLDAAVDASCE
GLIIKTLDKDATYEPSKRSNNWVKLKKDYIESIGDSLDLVPIAAYHGRGKRTGVYGAFLL
ACYNSSTEEFESICKIGTGFSEQVLEERSNSLRAKVVPQPKSYYRYEEKIKPDVWFEPTE
VWEVKAADLTISPVHRAAVGIVNSDKGISLRFPRLMRVREDKSPEEATSSDQVADMYNAQ
KQNQPKVTQADSDDDQ
NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt
atgctcacccttcgttcgtgtaattgtttgcgcttcatttcctttccttatcatcatcat
catcgtcatcatcaccattccaaatctctgtcttcctcgtttctcatattctgcaataaa
tcctcctattttcattctacacttcctctctttatcaaatccagtttcaaatccactatg
tctactcctcgctccgcattcgacgttctcatgaaaaaatccgccgcaaataaaaaatcc
cagtcttcttctcccaagaaacgcaaatcccctgattcccaaattgcccccaaaacccta
attaattccacgcaatctttacaacaacagccgcccaatacaattcagcataaggagacc
ccccaaaagccccaggactctagcttatcgctcggtgaagagaaaaaagttgatactgcc
aagaaacagcgtttggcaattgcagaaatgaagggaaagattaaatctttgatgaaaaat
cctaaagattttgacccaaatgaagtggtttattgggagaaaggtgaaaatgtccctttt
atatttgtttgttcagcttttgaatatttggaagatgagaaagagaagggcaggggtaat
attacaaatgttgcttgtaacatgttgaggagtgttatgagtaccactcctgatgatttg
ttggctctagtttatcttttggccaatcgggttgcgcccgctcatgagggcgttgagttg
ggtattggtgaagctatgattattaaggcacttgctgaggcctttgggaggaccgagaaa
caagttaagaaggaatatgagggaacaggagatttaggacgggttgctcaagcaagtcgc
tcatcacaatctatgatgcgaaggcctgagcctttaacagtttcaaaagttttcaacaca
tttcagctgattgcaaaggattctgggaaggacagtcaagataagaaaaagaatcgtatc
aaggcacttctggttgcagccaccgactgtgaacctcaatatctcattcgtctacttcag
ggaaagttgcgaatcaatttggcaggacagacacttttggctgcattgggacaagctgct
gtgttttctgaaaaccattgcactgtgccttcaaatattcagtctcctttagatgaggct
gcaaagattgttaaacaagtgtactctgtactccctgtctatgatagaatagtccctgct
cttctaaatgatggtgtatggaatctccccaagacatgtagctttacacctggtgtccca
gttggacccatgcttgcaaagccagccaaaagtgttactgaaatagtagaaaagttccag
ggtaaattcacctgtgaatacaagtatgatggtgaacgtgcccagatacattttctggag
aatggttcagttgagatatacagtcgaaatgctgagcggaatactggaaaatatcctgat
gttgttgttgcaatttcaagatcaaagaaatcctctgtgaaatctttcgttttggattgt
gaaatagttgcctataatcgtggggaaaagaaaattctgccctttcagatccttagcacc
cggccccggaaaaatgtggtaatgagtgacatcaaggtcgatgtttgcatatatgccttt
gatatgttgtaccttaatggcaaaccacttattgaagaacaactagaagatcgtagaaag
ctgctttatgattcatttgaggaagaccctgaacattttcagtttgcaacagcaataaca
tcaaatgatctcgaggaaattcaaaagttcctcgatgctgctgttgatgcaagttgcgag
ggtttaatcatcaaaacattggacaaggatgctacatacgagccttcgaagaggtcgaat
aactgggtaaaattgaagaaagattacatagaaagtattggcgactcgctggatcttgta
cctattgctgcttaccatggtcgtggaaagcgtacaggtgtctatggtgcttttcttctt
gcttgttacaacagcagtactgaggagtttgagagcatatgtaaaataggcactgggttt
tctgaacaagtgcttgaagaacgttccaatagtctgcgcgctaaagtagttcctcaacca
aagtcgtactacaggtatgaagaaaaaattaaaccagatgtgtggtttgagcccactgag
gtatgggaggtgaaagctgcagatttaactattagtcctgttcatcgtgcggcagttggt
atagtgaattctgataagggaatttctctgcggtttccacgtctaatgcgtgtccgggag
gacaagtctcccgaagaagccacatcatctgaccaggttgcagatatgtataatgctcag
aaacaaaatcagcctaaggttactcaagctgacagtgatgatgaccagtag

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