KEGG   Ricinus communis (castor bean): 8281056
Entry
8281056           CDS       T01087                                 
Name
(RefSeq) replication factor C subunit 1 isoform X3
  KO
K10754  replication factor C subunit 1
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03030  DNA replication
rcu03410  Base excision repair
rcu03420  Nucleotide excision repair
rcu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8281056
   03410 Base excision repair
    8281056
   03420 Nucleotide excision repair
    8281056
   03430 Mismatch repair
    8281056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcu03032]
    8281056
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8281056
DNA replication proteins [BR:rcu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    8281056
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     8281056
SSDB
Motif
Pfam: RFC1 BRCT AAA PTCB-BRCT AAA_22 AAA_30 AAA_19 DNA_pol3_delta Rad17 RuvB_N nSTAND3 BRCT_2 AAA_assoc_2 AAA_18 Zeta_toxin Sigma54_activ_2 AAA_14 AAA_24 AAA_5 Gp44_lid AAA_16 RNA_helicase TsaE AAA_17 AAA_28 NTPase_1 RsgA_GTPase
Other DBs
NCBI-GeneID: 8281056
NCBI-ProteinID: XP_002513738
LinkDB
Position
8:24567710..24581901
AA seq 977 aa
MQGDIRKWFMKAHDKGNGTAAKSAQPATDIKLPSVESKPEFPVQGGQDNSGRRKTSKYFA
KDKQQSKAEKEIEELPAKRKARNGSDRSTKTPPSKKVHKIEDNEDDDDDDDDDFVMPDKK
KSAGEVTPSKKSKNGSGRGFAQKTVDDNASNEDDATKSPLKSSGGRGGRGGSAAVSGGRG
RGVGRGGFMNFGERKDPPHKGEKDVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHG
GRITGSVSKKTNYLLCDEDIEGRKSSKAKELCTPFLTEDGLFDLIRSSNAKASVQKEAKK
PIEKVALLPKTSPKKAEVKSTSVTSTTIVSHKDSIAGTFPAKRKEQTTKLNSLSWTEKYR
PKAPNDIVGNQTLVNQLHNWLKNWNQQFLNAGNRGKSKKQNDSSAKKAVLLSGTPGIGKT
TSAKLVAQMLGFQAIEVNASDSRGKADSKINKGIGGSNANCIKELVSNEALGVNMDRSKH
PKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKIKSLVNYCLLLSFR
KPTKQQMAKRLMQVANAEGLQVNEIALEELAERVNGDLRMALNQLQYMSLSMSVIKYDDV
RQRLLSSAKDEDISPFTAVDKLFGFNGGKLRMDERIDLSMSDLDLVPLLIQENYINYRPS
SVCKDDNGMKRMSMIARAAESIADGDIINVQIRRYRQWQLSQSGSVASCIIPAALLHGQR
ETLEQGERNFNRFGGWLGKNSTMGKNLRLLEDLHVHLLASRESNLGRDTLRLQYFTLLLK
QLTEPLRILPKDEAVEKVVEFMNVYSISQEDIDTIVELSKFQGHKNPMDGIPSAVKAALT
RAYKGNKLMLRAADLVPLPGVKKAPKKRIATILESSDDGVAGEDGDALAESEEQNSSDAE
DLEGTVNGEKLQSELDSLNSKGIKVEMELKGTANSNAKRTPSSRGKGGAASSAEKKPAGR
GKECSGSTEKAGSKRKR
NT seq 2934 nt   +upstreamnt  +downstreamnt
atgcaaggagatattaggaaatggtttatgaaggcccatgacaaaggcaatggcactgct
gcaaagtctgcacaacctgcaacagatatcaaacttccttcagttgaatccaagcctgaa
ttccctgtacaaggaggacaagataattcaggcagaaggaaaactagcaagtattttgca
aaggataaacaacagtcaaaagctgaaaaagaaatcgaggaacttccagcaaagagaaaa
gctcgaaatggcagtgaccgatcaacgaaaacacctccttcaaagaaagttcacaaaatt
gaggacaatgaagatgatgatgacgacgacgacgacgactttgtcatgcctgataaaaag
aagagtgctggtgaggtcactcccagtaagaaatcgaagaatggttcaggtagaggtttt
gctcagaaaacggttgatgacaatgctagtaatgaagatgatgcaaccaaatctcctctt
aagtctagtggaggccgtggcggaagaggtggatcagcagcagtgtctggtggaagaggc
agaggagttggacggggtggatttatgaattttggtgaaaggaaagatcctccgcacaaa
ggagaaaaggatgtccctgaaggtgctcctgattgtttagctggtctgacttttgtaatt
agtgggacacttgacagtttagaaagagaagaagcagaagatctgattaaacggcatgga
ggccgcattactggatctgtcagcaagaaaactaattatcttttatgtgatgaggatatt
gagggacggaaatctagcaaagccaaagagctttgtactcccttccttacagaggatgga
ttatttgatttgatacgatcatctaatgcaaaggcttcagtgcaaaaagaggcaaagaag
cctattgagaaagttgcacttctgccaaagacaagccctaagaaagcagaagtgaaaagt
acgagcgtcacttcaacaacaattgtgagtcacaaagattcaattgctggtacctttcct
gcaaagagaaaagaacaaactaccaaactcaattctctttcatggacagaaaaatataga
ccaaaggctccaaatgatattgttgggaatcagacactggttaaccaactacataattgg
ttaaaaaattggaatcagcagttccttaatgctggaaacaggggaaagagcaagaaacaa
aatgattctagtgccaaaaaagctgtgctattgagtgggacacctggtatagggaaaacg
acatcagcaaagcttgttgctcagatgctaggtttccaagcaattgaggtgaatgccagt
gacagtagaggaaaggcagattccaagattaataagggaattggtggaagcaatgcaaac
tgtataaaggaacttgttagcaatgaagctttgggtgttaatatggataggtcgaagcat
ccaaaaacagttctaatcatggatgaagtagatgggatgtctgccggagatagaggtgga
attgctgatcttattgctagcataaagatatccaaaattcctataatctgcatttgtaat
gatcgttacagtcagaaaattaaaagtctagtgaactactgcttgctactcagtttccgg
aaacctacaaagcaacagatggcaaaaaggttaatgcaagttgcaaatgcagagggcctt
caagttaatgagatcgctcttgaggaacttgcagaaagagtgaatggagatttgcgcatg
gcactaaaccaattgcaatatatgagtctctccatgtcagtcattaaatatgatgatgtt
agacagcgccttcttagcagtgcaaaggatgaagatatttctcccttcacagctgttgac
aagctttttggctttaatggaggtaagctgagaatggatgagcggattgacctcagcatg
agtgatcttgatttagttcctcttcttattcaggagaattatattaattataggccaagt
tcagtttgtaaggatgacaacgggatgaaacgaatgagcatgattgcccgtgctgctgag
tctattgctgatggagatataataaacgtgcagattcgaagatatagacagtggcaactc
tctcaatctggttcagtagcatcctgtattattcctgctgcattgttgcatggacagagg
gagacacttgaacagggagaaaggaactttaacagatttggtgggtggctgggtaagaac
tcaactatgggaaaaaatctgaggcttttggaggatttgcatgtccaccttcttgcttct
cgtgaatctaatttgggaagggacactcttcgccttcaatattttactcttcttttaaaa
caattaactgagcctcttcggatactgcctaaggatgaagctgttgagaaggttgtggag
ttcatgaatgtttattcaattagtcaggaagacattgatacaattgtggagttatcgaaa
tttcaggggcataaaaatccgatggatggcattccatctgctgtgaaagcagcattgacc
agagcatataaaggaaacaaactgatgttacgagctgcagatttagtcccacttcctggt
gtgaaaaaggcccctaagaagcgtattgcaacaattctagaatcatctgatgatggtgta
gcaggggaagatggcgatgcattagcagaaagcgaagaacaaaactcttctgatgcagag
gacttagaagggactgtcaatggcgagaagctgcagtctgaacttgatagtttgaattca
aaaggaatcaaagtagagatggaactaaaaggcacggcaaattcaaatgccaagaggaca
ccatcaagcagaggaaaaggtggggctgcttcatctgcagaaaagaagccagcaggtaga
ggaaaagagtgttctggatccacagagaaggctggatctaagagaaagagataa

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