Roseobacter denitrificans: RD1_2295
Help
Entry
RD1_2295 CDS
T00376
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photolyase, putative
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_2295 (phrB)
Enzymes [BR:
rde01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RD1_2295 (phrB)
DNA repair and recombination proteins [BR:
rde03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RD1_2295 (phrB)
Prokaryotic type
RD1_2295 (phrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ABG31876
RoseoBase:
RD1_2295
UniProt:
Q167G7
LinkDB
All DBs
Position
2189803..2191221
Genome browser
AA seq
472 aa
AA seq
DB search
MSTSPVLVWFRRDLRLSDHPALDAAVKSGNPVIPVFIHDDQVETLGAAPRWRLGLGIGHL
SETLEGLNSRLILRRGPALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALKQDGI
DARSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNRDVDAPLSAPSRIDAPAAWPGSDT
LSDWNMGAAMDRGAAVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAIDGTSGLSE
NLALGEISPHQCWYAGLRAREEEKPGAETFLKELVWREFAYHLMHHTPRILTGNWKEDWD
SFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRMIVASYLTKHLLSDWK
IGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDKNRQYVKRWVA
EERRAPTQTALSYFDAIPRAWGLSADQDYPAPVVAADEGRKRALEAYENRGF
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacatctcccgttttggtctggttccggcgtgatctgcgcctgagcgatcacccc
gcattggacgctgccgtcaaatccggcaatcccgtcattcccgtattcatccacgatgat
caggttgagacgctgggcgcggcgcccagatggcgtctgggtctggggatcggacatctg
tcagaaacgctggaggggctcaacagccgcttgatcctgcggcgcggtccggcgcttgaa
acgcttcgcacgctcatccttgaaaccggggcaggggctgtgttctggtcgcgcctctat
gatccggcggcggtcgaacgcgacacggaggtgaaggcggcgctcaagcaggacggcatc
gacgcgcgctctttcggggggcatctgatgtttgaaccctggaccgtggagaccaagacg
ggcgggttctacaaagtctacacgccattttggaacatggtcaaaaaccgtgatgttgac
gcgcccctttcggccccgtccagaattgacgcacctgcggcatggccgggtagcgatacg
ctcagcgattggaacatgggcgctgcgatggatcgtggcgctgcggttgttgcaccctac
gttcgcttgggggaggccgccgcacagacgcgcctgaacacgttcatcgacaaaatcgtc
gcaggttatgacaccacccgcgatcagcccgcaatcgatggcacatcggggctgtcggaa
aacctcgcccttggcgagatcagcccgcatcaatgctggtatgccgggctgcgcgcgcgc
gaggaggagaaaccgggggccgagacgttcctcaaggaactggtctggcgcgaatttgcc
tatcacctgatgcaccacacgccgcgcatcctgacgggcaactggaaagaagactgggac
agcttcccgtggaaccgggatgaaacgacgcaggccgtccggcgctggcaacagggccgc
accggtatccagtttgtcgatgccgccatgcgcgagatgtatgtgacggggcggatgcac
aaccggggccgcatgatcgtggcgagttacctgaccaaacaccttctcagcgattggaag
atcgggttgaagtggtttgaggactgtctcatcgactgggacccggccagcaacgccatg
ggctggcagtggtcggcggggtccggacccgacgccaccccgtatttcagagtgttcaac
cccgtcacccagttggataagttcgacaagaaccgccagtatgtaaagcgctgggttgcc
gaggagcggcgtgcgccgacgcaaaccgcgctgtcctatttcgacgcgatcccgcgggcc
tggggcctgagtgcggatcaggattatcccgctccggttgtggcggcggatgaggggcgc
aagcgtgctttggaagcctatgaaaatagagggttttaa
DBGET
integrated database retrieval system
