Roseobacter denitrificans: RD1_3364
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Entry
RD1_3364 CDS
T00376
Symbol
murF
Name
(GenBank) UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
KO
K01929
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:
6.3.2.10
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00300
Lysine biosynthesis
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
rde01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RD1_3364 (murF)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_3364 (murF)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
RD1_3364 (murF)
Enzymes [BR:
rde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.10 UDP-N-acetylmuramoyl-tripeptide---D-alanyl-D-alanine ligase
RD1_3364 (murF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ABG32859
RoseoBase:
RD1_3364
UniProt:
Q163I4
LinkDB
All DBs
Position
complement(3228054..3229484)
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AA seq
476 aa
AA seq
DB search
MTLWTSAEAAEATGGTTTSQWNATGVSIDTRTLQAGDLFVALTDVRDGHDFVKQALDKGA
AAALVSHVPPGVPEDAPLLMVEDVQGALEDLGRAGRARMGGKVVAVTGSVGKTSTKEMLL
AMLSDQGRAHASVASYNNHWGVPLTLARMPRDTEFAVIEIGMNHPGEIAPLAKMAAPHVA
LITTVAAAHLEAFDDITGIAVEKASIFEGVVPNGVAILNADVDTSAILMAKAQDCRLRDI
TFGEHGYDFKLMRADLQGDTTVVRAEMGEVPILYKINSPGRHFAMNALGAIAVMAALRTD
VALALGSLGRWTPYKGRGQRERIYLDSVDTRLFVDLIDDSYNANPTSMAAALEVLAAAEV
TNDIGRVSKGRRIAYLGDMKELGPDEVALHAGLAHLPATKEIDVIHCIGPVMRALYDALP
EPQRGMWFEGAEEAATHVKTHIDSGDVVLAKGSLSMKLACVVDAIRKMGHAPLDEE
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttggacatccgcagaggcggcagaggccaccggcggcacgacgacgtcgcag
tggaacgccacgggggtgtccatcgacacgcgcaccctgcaagcgggggatttgtttgtc
gcccttacggatgtgcgcgacgggcatgattttgtaaaacaagcgctggacaaaggggcg
gcggcagcactggtcagccatgtgccgcccggtgtgcccgaggacgcgcccctgttgatg
gtcgaggatgttcaaggggcactcgaagacctcggacgggcgggccgcgcgcgcatgggc
ggcaaggtggtcgcggtgacgggaagtgtcggcaagacctccaccaaggagatgctgctg
gccatgctgtcggatcagggccgcgcgcatgcttcggttgccagctacaataaccattgg
ggtgtgccgctgacactggcacgcatgccgcgcgacacggaattcgcagtcatcgaaatc
ggcatgaaccaccccggagagatcgcaccgctggccaagatggccgccccgcatgtggcg
ctgattaccacggtcgcggcggcgcatctggaagcattcgacgacatcacggggattgcg
gtcgaaaaagcatccatctttgagggcgtggtgccgaacggtgtcgcgatcctgaatgca
gatgtcgacacatccgcgatcctgatggccaaggcgcaggattgcaggttgcgcgacatc
acatttggcgaacacgggtatgatttcaaactgatgcgcgcggatctgcaaggtgacacg
actgtggtgcgggctgagatgggcgaggtgccgatcctttacaagatcaactcgccgggg
cggcatttcgcgatgaatgcgctgggggccattgcggtgatggccgccctgcgcacggat
gtggcgctggccttgggttcacttggacgctggacaccctacaaggggcgcggccagcgg
gaacggatttacctcgacagcgtcgatacgcggctgttcgtggatctgattgatgacagc
tataacgccaacccgacctcgatggcggcggcccttgaggtgctggcggctgccgaggtg
acgaacgacatcgggcgcgtctcgaaggggcggcgcattgcctatcttggcgacatgaaa
gagcttggacccgatgaggttgcgcttcatgcgggccttgcgcatttgcccgccacaaaa
gagatcgacgtgatccactgtatcggacctgtcatgcgcgcgctctatgacgctttgcca
gagccgcagcgcggcatgtggtttgaaggcgctgaagaggccgcaacccatgtaaaaaca
catatcgatagcggtgacgtggtgcttgccaaaggctcgctcagcatgaagctggcctgc
gtcgttgacgccatccgcaaaatgggacatgccccgctcgacgaagaatag
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