Rothia dentocariosa: HMPREF0733_10313
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Entry
HMPREF0733_10313 CDS
T01343
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HMPREF0733_10313 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdn03021
]
HMPREF0733_10313 (rpoB)
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_10313 (rpoB)
Enzymes [BR:
rdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HMPREF0733_10313 (rpoB)
Transcription machinery [BR:
rdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HMPREF0733_10313 (rpoB)
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HMPREF0733_10313 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ADP39771
UniProt:
E3GZN6
LinkDB
All DBs
Position
complement(325733..329311)
Genome browser
AA seq
1192 aa
AA seq
DB search
MMSYGSVAGRQIANRHVCGRIPILVASSTFNHDAANGAENNSDRRISFAKISEPLKVPNL
LAIQTDSFDRLVGNERWAKRLENAQATGDTSVPEKSGLAEIFEEISPIRDFQETMQLSFS
DPEFSDPKYTMEECKDRDATYAAPLYVKAEFMNLTTGEVKQQTLFMGDFPLMTESGTFVI
NGTERVVVSQLVRSPGAYFEKAPDRTSDKDIYSARVIPSRGAWFELEIDKRDQVGVRLDR
KRKQSVTVLLKALGWTEAKILAEFGNYDSIRATLEKDSVSTRDEALLDIYRKLRPGEPPT
VEAAQALLDNMYFTPRRYDLAKVGRYKVNRKLGVDVPLDSPEASVLSQDDIAQMIHYLCA
LHAQESSIPGKRDGKEISVKIDIDDIDHFGNRRIRTVGELIENQIRTGLSRMERVVRERM
TTQDVDSITPQSLVNIRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLS
RDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLATYGRINSYGFIETPYRVVEDGKV
TDKVRYLTADDEKSVIIAQANAPLTNERTFAEDEVLCRAGDGSGEAVLVAPGAVQYMDVS
PRQMVSVATALIPYLEHDDANRALMGANMQRQAVPLLESEAPVVGTGMEKYAALDSGDSV
LAKKAGVVSEVSADLVLVRNDDGTTSSYPIMKFSRSNPGNCYNQRVVVKAGQRVEERDVI
ADGPSTDGGELALGKNLLVAYMPWEGLNYEDAIILSQRMVSEDVLTSIHIEEHEIDARDT
KLGPEEITRDIPNVSEEVLSALDDRGIIHIGAEVEAGDILVGKVTPKGETELTPEERLLR
AIFGEKSREVRDTSLKVPHGESGTVIGVRIFDRESDDEDDLPPGVNKLVRVYVAQKRKIT
DGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVDVILNPLGVPGRMNIGQVLEVHTGWLA
KQGWKIEGDPAWLKNMPNFPKESGPTRLATPVFDGAHEDELFDLMDHANPNRDGDRLITR
SGKARLIDGRSGEPFPDPISVGYQYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFG
GQRFGEMEVWALEAYGAAYTLQEILTVKSDDVAGRVKVYEAIVKGENIPEPGIPESFKVL
IKEMQSLCLNVEVLSTDGKTIEMSDSEEEGFRAAEDMGVSLTHEEPSSVDEL
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttacggctctgtcgccgggaggcagattgctaacagacatgtctgtggaagg
atccccattttggtcgcttcgagcacctttaaccatgacgccgctaacggtgcggaaaat
aattccgaccgtcgtatctcattcgcaaaaattagtgaaccgctcaaggttcccaacctg
ctggctatccagaccgacagcttcgaccgcctcgtgggtaacgagcgctgggcaaagcgt
ctggaaaacgcccaagcaacaggtgacacctctgtacctgagaaatccggtcttgctgag
atcttcgaggagatttccccgattcgtgatttccaggaaaccatgcagctatccttctcg
gatccggaattctccgatcccaagtacaccatggaagagtgcaaggaccgtgacgcaacc
tatgcggcacccctgtacgttaaagctgaattcatgaacctgaccaccggtgaggttaag
cagcagaccctgttcatgggcgacttcccgctcatgaccgaatccggtaccttcgtgatt
aacggtaccgagcgtgtggtcgtttcccagctggtgcgttcacccggtgcatacttcgag
aaggcacccgaccgcacctccgataaggacatctactcagcacgcgttattccttcgcgc
ggtgcatggtttgagcttgaaatagacaagcgcgatcaggtgggtgtgcgcctggaccgc
aagcgtaagcagtctgtgaccgtgctgttgaaggctctgggatggaccgaggcaaagatc
cttgccgagttcgggaactatgattctattcgtgcaaccctagagaaggactccgtctca
acccgcgacgaggctctgctcgatatttaccgtaagctccgcccgggcgagcccccaacg
gtagaggccgcacaggcgttgctcgacaacatgtacttcaccccgcgccgctatgatttg
gcgaaggttggccgttacaaggtgaaccgtaagctcggtgtagatgttcctcttgattcc
cctgaggcatcggtgctcagccaggacgacatcgctcagatgattcactacctgtgcgcc
ctgcacgctcaggagagcagcatccccggtaagcgtgacggcaaggaaatttccgttaag
atcgatatcgacgatattgaccacttcggtaaccgccgtatccgcactgtgggcgagctg
attgagaaccagattcgcaccggtctttctcgcatggagcgtgtggtgcgtgagcgcatg
accactcaggacgttgattccatcaccccgcagtccttggtgaacatccgtcccgtggtg
gcagcgattaaagagttcttcggtacttcgcagctttcgcagttcatggatcagaacaac
ccgctggctgggctaacccacaagcgtcgtctttcggcgctgggccccggcggtctttcc
cgcgaccgcgcgggcatggaagtgcgcgacgtgcacccctcgcactacggtcgtatgtgc
cccatcgaaacccctgaaggcccgaacattggtctgatcggttcgttggcaacctacggg
cgtatcaactcttacggctttatcgagaccccctaccgcgtggttgaagatggtaaggtc
accgacaaggtgcgttacctgactgccgacgacgagaagagcgttattattgcgcaggca
aacgccccgctgactaacgagcgtaccttcgctgaggacgaggttctctgccgtgcaggc
gatggttctggcgaggccgtgctggttgcccctggcgctgtgcagtacatggacgtttcc
ccgcgtcagatggtgtcagtggcaaccgctctaattccctaccttgagcacgacgacgca
aaccgtgcgctaatgggcgctaacatgcagcgccaggctgtgccgctgttggagtctgag
gctcccgtcgttggtaccggtatggagaagtacgctgcgcttgactccggcgattccgtg
ctggcgaagaaagctggcgtggtatcagaggtctcggccgatctggtattggtccgcaac
gatgacggcaccaccagctcgtacccgatcatgaagttctcccgctcgaacccgggcaac
tgctacaaccagcgtgttgtggtgaaggccggtcagcgtgtggaagagcgtgacgttatt
gcggacggcccttcgaccgacggcggtgagctcgctctgggtaagaacctgctcgtggca
tacatgccctgggaaggtctgaactatgaggatgctattattctctcccagcgcatggtt
tccgaggacgtgctgacctcgattcacatcgaagagcacgaaatcgacgctcgtgacact
aagctgggtcccgaagaaattacccgcgatattcccaacgtttctgaggaagttctctct
gcactggatgaccgcggtattatccacattggtgccgaggttgaggctggcgacatcctg
gtcggtaaggtaacccccaagggcgagaccgagctgacccctgaagagcgcctgctgcgc
gcaatcttcggcgagaagtcccgcgaagttcgtgacacttctctgaaggttccccacggt
gaatccggtaccgtgatcggcgttcgcatcttcgaccgcgaaagcgacgatgaagacgat
ctgcccccgggtgttaacaagcttgtgcgcgtgtacgttgcgcagaagcgtaaaattacc
gacggcgacaagctcgcaggtcgccacggtaacaagggcgttatttccaagatcctgccg
gtggaagacatgcccttcttggaagacggtactcccgttgatgtcattctgaacccgttg
ggcgtccctggtcgtatgaacatcggccaggtgttagaggttcacaccggctggctcgct
aagcagggttggaagattgagggcgacccggcgtggctgaagaatatgccgaacttcccg
aaggaatccggacctacccgcctggcgacccccgtgttcgacggcgctcatgaggatgag
ctcttcgacttgatggatcacgcgaacccgaaccgtgacggcgatcgtctgattactcgc
tccggtaaggcacgtctgattgacggtcgttcgggtgagccgttccctgacccgatttcg
gtgggttatcagtacatcctgaagctgcaccacctggtggacgacaagattcacgctcgt
tccaccggtccttactcgatgattacccagcagccgttgggcggtaaggcacaattcggt
ggtcagcgcttcggcgagatggaagtgtgggcgctggaagcatacggcgccgcctacacc
ctgcaggaaatcttgaccgtcaagtctgacgatgtggccggtcgtgtaaaggtttacgag
gcgatcgtcaagggcgagaatatccccgagccgggcatccccgaatccttcaaggttctt
attaaagaaatgcagtcactgtgcctgaacgtcgaggtactttctaccgacgggaagacc
attgaaatgagcgactcggaggaagaaggcttccgggcagcagaagatatgggcgtgagc
ctaacccacgaggagcccagctccgtggacgagctctaa
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