Rhizobium etli CIAT 652: RHECIAT_CH0000692
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Entry
RHECIAT_CH0000692 CDS
T00720
Name
(GenBank) probable ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHECIAT_CH0000692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0000692
Enzymes [BR:
rec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHECIAT_CH0000692
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHECIAT_CH0000692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACE89681
UniProt:
B3PPH4
LinkDB
All DBs
Position
complement(686394..688901)
Genome browser
AA seq
835 aa
AA seq
DB search
MALETYQAKRNFKLTPEPRGQKGRSTGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTKG
PSLNPEDKRLAVHVEDHPLSYGDFEGIIPKGQYGGGTVIVWDRGTWTPVGDADKAYRKGH
LEFELDGEKLKGRWHLVRMHGRPGEARENWLLIKGDDAEARHDGNILEERPESAKTGRQL
EEVAENPDATWKSRSGNGKAVAAKTPAQKAKPSGSGERQWPKGARKGAMPDFIEPVLAKL
KPKPPAGDRWIHEIKFDGYRLQVRMEDGKVRMLTRSGLDWTAKFGKDVLDAFAALPVQSA
VIDGEIVVESDSGASDFSALQRDLSEGRNDRFVFYAFDLLHLDGHNLLDARLIDRKHLLE
SLLPADNDKLRYSAHFNERGGLVLDHACRLSLEGVLSKLRDSKYTSGRKGDWIKSKCSHR
QEFVIGGYVPSTSMKNAIGSLAMGYYRDGELKHVGRVGTGYTVATAQMLYEKLSRMTQNE
NSFDDKLTAEERRGLIYVKPQLVGEVEFRAWSADGNLRHAAFRGLREDKLAKEVTRETEQ
TAAPLPKAAVTLTHPDRIYWPDEGVTKEGLANYYAQVWRFMAPYVVNRPLALLRLPDGIN
GRQRFFQKHAWKGMNPHIEEIIDPKDKQGEKLLRITDFDGVVALVQSAVLEIHPWGTTTD
NWEKPDMITMDLDPGEAVAWEDVIVAAYELKARLEAEGLAAFVKTSGGKGLHVVTPLAPK
ASWVEVKAFAKGLADSMSADDPDRYLATATKAKRKGRIFIDYLRNGRGNTAVAAYSTRAR
PGAAVSMPLEWSELTADIGPAYFTVDNTPTRLDALPGDPWDGFFAAAKPLEKKKG
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccctcgagacctatcaggcgaagcgcaatttcaaactcaccccggagccgcgcggg
cagaagggccgcagcaccggcaacagtttcgtcatccagaagcatgatgcgaccaggctg
cattatgacttccggctcgagatggatggggtgctgaagagctgggcggtgacgaagggg
ccgagcctcaacccggaggacaagcgcctggccgtgcatgtcgaagaccacccgctgtcc
tatggcgatttcgaaggcatcatcccgaaagggcagtatggcggcggcaccgtcatcgtc
tgggaccgcggcacctggacgccggtcggcgacgctgacaaggcctaccggaaaggtcat
ctggaattcgagctcgacggcgagaagctgaagggacgctggcacctcgtgcgcatgcac
ggccggcccggcgaggcgcgcgagaactggctgctgatcaagggggatgatgccgaggcg
cgccatgacggaaatattctcgaggaacggccggaatcggccaagacaggccggcagctc
gaagaggtggcggaaaatcccgatgcgacctggaagtccagatccggaaacggcaaggcg
gttgccgccaagacgccggcacaaaaggcgaagccgtcgggatccggcgaacgccaatgg
cctaaaggcgcgcgcaagggcgcaatgcccgacttcatcgaaccggtgcttgccaagctg
aaaccgaagccgccggcgggcgatcgctggatccacgagatcaagttcgacggctatcgg
ctgcaggtcaggatggaggacggcaaggtccgtatgttgacccgcagcggtctcgactgg
acggcaaaattcggcaaggacgtgctcgacgcctttgccgccctgccggtgcagtcggcg
gtgatcgatggcgaaattgtcgtcgagagcgatagcggcgcctcggatttctcagcgctc
cagcgcgatctgagcgagggccgcaacgaccgcttcgtcttctatgctttcgatctcctt
catctcgacggccacaacctgcttgatgccaggctcatcgatcgcaagcatctgctggaa
agcctgctgcccgccgataatgacaagctgcgttacagcgcgcatttcaacgaacgcggc
ggcctggtgctcgatcatgcctgccggctcagcctcgaaggcgtactctccaagctgcgc
gacagcaaatacacctcgggacgcaagggcgattggatcaaatcgaagtgctcgcaccgg
caggaattcgtcatcggcggctacgtgccatcgacatcgatgaagaatgcgatcggttcg
ctggcgatgggctattaccgagatggcgagctcaagcatgtcgggcgggtcggcaccggg
tatacggtggccaccgcgcagatgctttatgagaagctgtcgcggatgacgcagaacgag
aactccttcgacgacaagctcaccgccgaggagaggcgtgggctgatctatgtcaagccg
cagctggtcggcgaagtcgagttccgcgcctggtcggccgacggcaatctgcgccatgca
gccttccgcggactgcgcgaggacaagctcgccaaagaggtgacgcgcgagacggaacag
accgcagcccccctgccgaaagccgctgtgacgctcactcaccccgaccgtatctactgg
ccggacgaaggtgttaccaaggaagggctggcgaactattatgcgcaggtctggcgcttc
atggcgccctacgtcgtcaaccgccctttggcgctcttgcgtctgccggacggaatcaac
ggtcgtcagcgtttttttcaaaagcacgcctggaaaggcatgaaccctcatatcgaggaa
atcatcgatccgaaggacaagcagggagagaagttgctgcggataaccgatttcgacggg
gtcgtggcgctggtgcaatcggccgtgcttgaaatccacccatggggcacgacgaccgac
aattgggaaaagcccgacatgatcaccatggacctcgatcccggcgaggcggtggcgtgg
gaagatgtgatagtcgccgcttacgaattgaaggcgcggctggaagccgaaggcctcgcc
gccttcgtcaagacgtcaggcggcaaggggctgcatgtggtgacgccgctcgcgccgaaa
gccagctgggtggaggtgaaggctttcgccaaagggctggccgacagcatgtcggccgat
gatcccgaccgttatctcgccacggcgacgaaggccaagcgcaaagggcggatcttcatc
gattatctgcgcaatggccgcggcaacacggcggttgcagcctattccacacgcgcaagg
ccgggtgcggccgtttccatgccgctggaatggagcgaactgaccgccgacatcgggccg
gcctatttcactgtcgacaatacgccgacgcggctcgacgccttgcccggagatccctgg
gatggatttttcgcggcggcgaaaccgttggaaaagaagaaaggatag
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