Rhizobium etli CIAT 652: RHECIAT_CH0001742
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Entry
RHECIAT_CH0001742 CDS
T00720
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase protein, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHECIAT_CH0001742 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rec03021
]
RHECIAT_CH0001742 (rpoC)
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0001742 (rpoC)
Enzymes [BR:
rec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHECIAT_CH0001742 (rpoC)
Transcription machinery [BR:
rec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHECIAT_CH0001742 (rpoC)
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHECIAT_CH0001742 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ACE90712
UniProt:
B3PW60
LinkDB
All DBs
Position
1740202..1744410
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
SKVVTLHTKIRGRFKSVDEDGKPYSKIYETTPGRLLIGELLPKNGKVPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPATKAKIVADTENL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDENTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTETGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
VLRNSEGSLVAMGRNMTVQILDERGVERSSQRVAYGSKLHVDEGDKVKRGQRLAEWDPYT
RPMMTEVAGTVQFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLSRGGDARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNVDRIELEDVNDHLIEQGKKPAHGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDELILEERRK
GTGAAVATPMLQDMAEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaatttcgattcc
attcggatttcgatcgcgtctccggagaagatcctctcctggtcctacggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagccggaacgcgacggtctgttctgcgcg
cgcatcttcgggccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgtcgcccacatctggttcctgaagtcg
cttccgtcacgcatttcgacgctgctcgacatgacgctgaaggatgtcgagcgcgtcctc
tatttcgaaaactacatcgtgaccgagccgggcctgaccgctctgaaggagcaccagctt
ctctcggaagaagagtacatgctcgccgtcgatgaatacggcgaagaccagttcaccgcg
atgatcggcgccgaggcgatctacgagatgctggcctcgatgaacctcgaaaagatcgct
ggcgacctgcgctccgagcttgccgacaccacgtcggatctcaagcagaagaagcttatg
aagcggctgaagatcgtcgagaacttcatggaatcgggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcattccgccggatctgcgtccgctggttccgctggatggtggt
cgtttcgcgacctcggatctgaacgatctctatcgtcgcgttatcaaccgcaacaaccgt
ctgaagcgcctgatcgagcttcgcgccccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggttgacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctctccgacatgctgaagggtaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcagtcatcgtcaccggt
ccggaactgaagctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctatgcccgtctcgacgccaagggttactcctcgaccgtcaagcaggccaag
aagctggtcgagaaggaaaagcctgaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgtgcgccgacgctgcaccgcctgggcatccaggccttcgaa
cccaccctggtcgaaggcaaggcgatccagttgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctctactacctgtcgatcctcaaccag
aacgagccgggcgaaggcatggccttctccgatctcggcgagctgcatcacgccctcgag
agcaaggtcgtgacgctgcacaccaagatccgcggccgcttcaagtcggtcgacgaggat
ggcaagccctactcgaagatctatgagacgacgcccggccgtcttctcatcggcgaactg
ctgccgaagaacggcaaggttcccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggctttgctcatgcctgccgtgccggcatttcgttcggc
aaggacgacatggtcattccggccaccaaggcgaagatcgttgccgacaccgaaaacctg
gtgaaggaatacgagcagcagtacaatgacggtctgatcacccagggcgagaagtacaac
aaggttgtcgacgcctggggcaaggcaaccgaaaaggtcgccgaagagatgatggcccgc
attaaggctgtcgaattcgatgagaacaccggccgtcagaagccgatgaactcgatctac
atgatgtcccactccggcgcccgcggttctccgaaccagatgcgccagctgggcggtatg
cgcggcctcatggccaagccgtcgggtgaaatcattgagacgccgatcatctcgaacttc
aaggaaggtctgaccgtcaacgagtacttcaactcgacgcacggcgcccgtaagggtctc
gcagacaccgcgttgaagaccgccaactccggttacctgacccgccgtcttgtcgacgtt
gcgcaggactgcatcgtcacgcatgtcgattgcggaaccgaaaccggtctgacgatgacg
gcgatcgtcgacgccggccaggtcgtcgcctcgctcggcgcccgtatcctcggccgcacg
gcgctcgacgacatcgatcatccggtcaccggcgaacgtatcgtcgatgccggcaagatg
atcctcgagcctgatgtcatcgagatcgagaaggccggtatccagtcgatccgcatccgt
tcggcgctcacctgcgaaatccagacgggtgtctgctcggtctgctacggccgcgacctc
gcgcgcggtacgcctgtcaacatgggcgaagccgtcggcgttatcgccgctcagtcgatc
ggcgagcctggaacccagctcaccatgcgtaccttccaccttggcggtacggcaaccgtg
gtcgaccaatcgttcctcgaagcctcgtacgaaggtacggtgcagatcaagaaccgcaac
gtgctgcgcaactcggaaggcagcctcgttgccatgggccgcaacatgaccgtccagatc
ctggatgagcgtggcgtggagcgctcctcgcagcgcgtcgcctacggttcgaagctgcat
gtcgacgaaggcgacaaggtcaagcgcggccagcgtctggccgagtgggatccttacacc
cgcccgatgatgacggaagtggccggtacggttcagttcgaagacctcgtcgacggtctc
tccgttctcgaagcgaccgacgaatccaccggcatcaccaagcgtcaggtcatcgactgg
cgttcgaccccgcgcggttcggacctcaagccggcgatcgtcatcaaggacgccagcggc
aatgttgccaagctgtcgcgcggcggtgacgctcgcttcctgctctcggttgacgccatt
ctgtcggttgagccgggcacgaaggtctcccagggtgacgttctcgcccgttcgccgctc
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactgttcgaa
gcgcgccgtccgaaggatcacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactatatcgaa
aagggtgattacatcctcgacggcaacccggctccgcacgacatcctggcgatcaagggc
gtggaggcactcgcttcctacctcgtcaacgaaatccaggaagtctaccgtctgcagggc
gttgtcatcaacgacaagcacatcgaggtgatcgtccgtcagatgctgcagaaggtggaa
atcaccgacgcaggcgactcgacctatatcgtcggcgataatgtcgaccggatcgagctc
gaggacgtcaacgaccacctgatcgaacagggcaagaagcccgcccatggcgatccggtt
ctgctcggcatcaccaaggcgtcgctgcagaccccgtccttcatctcggccgcgtccttc
caggaaacgaccaaggtgctgacggaagccgcgatcgccggcaagaccgatggcctgcag
ggtctgaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgtatcgccacctcgcgcgacgagctgatcctcgaagagcgtcgcaag
ggcaccggtgcagccgttgccactccgatgctgcaggacatggctgaaaaggccccggcc
gcggaataa
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