Rubrivivax gelatinosus: RGE_30560
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Entry
RGE_30560 CDS
T01803
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
rge
Rubrivivax gelatinosus
Pathway
rge02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RGE_30560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rge03021
]
RGE_30560
Transcription machinery [BR:
rge03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RGE_30560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_38
HTH_28
HTH_17
HTH_24
GerE
HTH_31
TnsD
Motif
Other DBs
NCBI-ProteinID:
BAL96395
UniProt:
I0HTQ8
LinkDB
All DBs
Position
complement(3249540..3250049)
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AA seq
169 aa
AA seq
DB search
MPATDLASPPPFERLYAEHHGWLRDWLRRKLGNAHDAADLAHDTYLRLLRSGHVPPQDAS
RRHLAQVANGLVVDLYRRRAIEAAYLDALAALPPALMPSPEERALAVEALVQLDAALQSL
APKAREALLLCRLDGLGYREIATRLGVSVSSVEKYVAAALLACHRALQP
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
gtgccggccaccgacctcgcctcaccgccaccgttcgagcgcctgtacgccgagcaccac
ggctggctgcgcgactggctgcgccgcaagctgggcaacgcccacgacgccgccgacctg
gcgcacgacacctatctgcgattgctgcgcagcggccacgtgccgccgcaggacgcgtcg
cgccgccatctggcgcaggtcgccaacggcctcgtcgtcgacctgtaccggcggcgggcg
atcgaggccgcgtacctcgacgcgctggcggccttgcccccggcgctgatgccctcgccc
gaggagcgtgcgctggccgtcgaggcgctggtgcagctggacgccgcgctgcagtcgctg
gcgcccaaggcgcgcgaggcgctgctgctgtgccggctcgacggcctgggctaccgcgag
atcgccacgcggctgggcgtctcggtgtcctcggtcgagaagtacgtcgccgcggcgctg
ctggcctgccaccgggcgctgcagccgtga
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