Roseburia hominis: RHOM_13000
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Entry
RHOM_13000 CDS
T01621
Name
(GenBank) Superfamily I helicase domain and RecB family exonuclease domain protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rho
Roseburia hominis
Pathway
rho03420
Nucleotide excision repair
rho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHOM_13000
03430 Mismatch repair
RHOM_13000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rho03400
]
RHOM_13000
Enzymes [BR:
rho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHOM_13000
DNA repair and recombination proteins [BR:
rho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHOM_13000
MMR (mismatch excision repair)
Other MMR factors
RHOM_13000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
UvrD_C_2
Cas_Cas4
AAA_30
AAA_11
Helicase_RecD
ER
Borrelia_orfD
Motif
Other DBs
NCBI-ProteinID:
AEN97708
UniProt:
G2T4A3
LinkDB
All DBs
Position
complement(2831058..2833946)
Genome browser
AA seq
962 aa
AA seq
DB search
MAFDFENANEAQRSAISTTDGPLLIIAGPGTGKTYTLVKRIVYLITEKDVLPEEIMIATF
TEKAAKELITRITNELYAIGVSVNLNEMYIGTFHSICLRILKDHLEYTRIKKNYRMLDNF
DQQYMVFQKINRFRNLPYFDVIFDKKQGAWRQAGEIVKYVNNLAEELVDIDEMQGDADEH
IVAVANIMKQYNILMEDENLIDFSSIQTEAYKLLIEEPSILEEIQQKIKYVMVDEYQDTN
YIQELLVFLIAGKNKNICVVGDDDQGLYRFRGATIRNILEFPGHFAEGECKQVKLVTNYR
SERQIIDFYNKWMSTTDGRAYDFMWKNFRFEKKIVPPEGKKAAKVGVIKCSGKDLLDDWY
EQVYSFITQLKSSGVLTDYNQIAVLCKSVKGDKIIGMVEYLEEHGIKVYSPRSEMFFERK
EIKQVIGCMILCFPEYVRKLQQRDFSYDFENLYKYYDTQCIAAARELILQYRDTLGKWIA
EKMHKHANLKKDNADYAFTGLLYQLLQFEPFSTYLGIDMKSGVIDERPARNLSILSSILG
KYEYLHRIDVFTENNIIESVERFFNMYFRFLFDGGITEYEDDSEYAPSGCVSFMTIHQSK
GMEFPIVIVDSLNGTPRSSGNHLLEEIENKYFHRKVFETREDIKFFDFWRLYYTAFSRAQ
NLLVLSCCEKKGHGATPSKYFEECYEKLPAYEDVNLSEIKLEKVKPVNIKDTYSFTSHIA
LYENCALQYKFFKELGFTQVRVGATLFGTLVHETIEDIHRAAMRHEEQTIVPETIREWFD
TNYMTLSKSEHSYLGQPQIEAAYKQVLRYVERNQSDWSRIQDAEVEVSLVKPDYILLGKV
DLIRGEGDTVEIVDFKSEKKPDVLIETAEMNRYRRQLEVYAHLIEEKTGKKVSKMHLYYT
GEDNGVPTVTFNKSTEMIDKTIKEFDAVVEKIQSKDFSGRAKDKNLCANCDMRHYCRRKG
DC
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atggcatttgattttgaaaacgcaaatgaagcacagagaagtgctatttcaacaacagat
ggtccgttgttgattattgcaggccctggtacagggaaaacatatacattagtaaagaga
attgtttatcttataactgaaaaagatgtgcttcctgaggaaataatgattgctacattt
acagaaaaggctgcgaaagaactgattacacgtatcacaaatgaattgtatgcaatagga
gtatccgtaaatctgaatgaaatgtatattggtacttttcattcaatttgtctgagaatt
cttaaagatcatcttgaatatacaaggattaagaaaaattataggatgctggataatttt
gatcaacagtatatggtgtttcaaaagattaatagatttaggaacttaccttattttgat
gttatatttgataaaaagcaaggagcttggagacaagccggagaaatagttaagtatgtt
aataatcttgctgaagaattggttgatattgatgaaatgcagggagacgcggatgaacat
attgtagctgttgcaaatattatgaaacagtacaatatcttgatggaagatgagaattta
attgatttttcaagtattcaaacagaagcatataaattattaatcgaagaaccaagtata
ttggaagaaatacagcagaaaattaaatatgtgatggtggatgaatatcaggatacaaat
tacatacaggaattacttgtgtttttgattgccggaaaaaataaaaatatatgtgttgtg
ggagacgatgatcaaggtttgtatcgttttcgaggagcaacaataagaaatatattggaa
tttccaggccattttgcagaaggagaatgtaagcaggttaaacttgttacaaattatcgt
tcagagagacaaattattgatttttacaataagtggatgagcacaacagatggtagagca
tatgattttatgtggaagaattttaggtttgagaagaagattgttccgccggaagggaaa
aaggctgctaaagtaggcgttattaaatgttcgggaaaagatttgttagatgattggtat
gaacaagtgtattcatttattacacaattaaaaagtagtggtgtactaactgattacaat
cagattgcagttctttgcaagtctgttaaaggggataaaatcataggtatggttgaatat
cttgaggaacatggtattaaagtttattcacctcgttcggaaatgttctttgaaagaaaa
gagataaaacaggtaatagggtgtatgatcttatgtttcccagagtatgttcgtaagtta
caacaaagagatttttcgtatgattttgaaaatctctataaatattacgatactcaatgt
atagctgctgcaagagagctcattttacagtatagagatacattgggtaaatggattgca
gagaagatgcataaacacgctaatctaaaaaaggataatgcagattacgcatttacagga
ttactgtatcagttattgcagtttgaaccatttagtacatacttagggatagatatgaaa
tcaggggtgatagatgaaagacctgcaagaaacttatcaattttatcgtcaattttggga
aagtacgaatatctacatcggatagatgtcttcacggaaaacaatattatagagtcggta
gaacgtttttttaatatgtattttcgctttttatttgatggaggaattacagagtatgaa
gatgattcggagtatgctccgagtgggtgcgtttcatttatgactatacatcagtcaaaa
ggaatggagtttccaatagtgattgttgattcattaaatggaacaccgagaagtagtgga
aatcatttgctagaagaaatagaaaataaatatttccatagaaaagtttttgagacgagg
gaagatataaaattttttgatttttggcgattatattatacggcattttcaagagcacaa
aatttattggtactctcttgttgtgaaaagaaaggtcatggagccacaccaagcaaatat
tttgaagagtgctatgagaagctacctgcttatgaagatgtaaatctttctgaaataaag
ttagaaaaggtaaagcctgtaaatataaaggatacatattcttttacttcgcacattgct
ctgtatgagaattgtgcactacagtataaatttttcaaagaacttggatttacgcaggta
agagtaggtgcaacactctttggaacattagtgcatgagacaatagaagacattcatcgt
gcagctatgcgtcatgaagaacagacaatagtgccggaaacaatacgagagtggtttgat
acaaattatatgacattatcgaaaagtgagcattcttatttaggacaaccgcagatagaa
gctgcgtataaacaggttttgaggtatgttgagagaaatcagagtgactggagtcgaatt
caagatgcagaggtggaagtaagtttagtaaagcctgattatatattgcttggaaaggtt
gaccttatcaggggcgaaggtgatacagtagagattgttgactttaaatccgagaagaaa
ccagatgttttaattgaaacagcggagatgaatcgttataggagacagcttgaagtgtat
gctcatcttattgaggaaaagacaggtaaaaaggtaagtaaaatgcatttgtattataca
ggtgaggataatggtgtaccaacagtaacatttaataagtcaacggaaatgattgataaa
acaataaaagaatttgatgcagtggttgaaaaaatacaaagtaaagattttagtggtaga
gccaaagataaaaatctttgtgccaactgtgatatgagacattactgtagaagaaaagga
gattgctaa
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