KEGG   Rhizobium sp. N731: AMK02_CH01208Help
Entry
AMK02_CH01208     CDS       T04809                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rhx  Rhizobium sp. N731
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhx00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    AMK02_CH01208
   03410 Base excision repair
    AMK02_CH01208
   03420 Nucleotide excision repair
    AMK02_CH01208
   03430 Mismatch repair
    AMK02_CH01208
Enzymes [BR:rhx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMK02_CH01208
    6.5.1.6  DNA ligase (ATP or NAD+)
     AMK02_CH01208
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AMK02_CH01208
DNA replication proteins [BR:rhx03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AMK02_CH01208
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AMK02_CH01208
DNA repair and recombination proteins [BR:rhx03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AMK02_CH01208
   NER (nucleotide excision repair)
    Other NER factors
     AMK02_CH01208
   MMR (mismatch exicision repair)
    Other MMR factors
     AMK02_CH01208
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
1207405..1209030
Genome map
AA seq 541 aa AA seqDB search
MKAFAELLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDVRNVKPAMLRDL
ALERIDEVLFHYSYDYVGDLAETISLVWDNERDIDRSALAQPRLGEVVTRMNGLGRTEVR
GYVRDLLDQLDSSGRFAFIKLATGALRIGVSARLAKQALADLGGKDVTEIETLWHGLQPP
YEALFQWLAGDGDKPALTTPAIFHSVMLANAVEEGDLAGLDPADYAAEWKWDGIRVQLSR
SGDRRKIYSRSGDDISGAFPDILEAINFSGVVDGELLVGGTARSNSPTRTFSDLQQRLNR
KTVTAKMLDDYPAFIRAYDMLFDGEEDIRGRTYVERRGRLSEIIDRAPHDRFDLSPLVPF
SSWEELDALRAAPPDPVIEGVMIKRRDSIYQAGRMKGPWFKWKRNPYNVDAVLMYAQRGH
GKRSSYYSDFTFGVWADDEDGEQLVPVGKAYFGFTDAELELLDKFVRNNTTERFGPVRAV
RADRDFGFVVEVAFEGINRSTRHKSGVAMRFPRIARLRPDKPPYEADRLRTLVAMIDAKP
G
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgccgagctcctcgaccgcctggtcctgacccccagccgcaacggcaaa
ctcaagctgctgaccgattatttccgcgacacgcccgacccggaccgcggttacggcctt
gccgccatcgccggcacgcttgacgtgcgcaatgtcaagcccgccatgctacgcgacctg
gcgctggagcgtatagacgaggtgctgttccattattcctacgattatgtcggcgatctc
gccgaaaccatttcgcttgtctgggacaatgagcgggatatcgaccgctcggccctggct
cagccgcgcctgggggaggtcgtcacccgcatgaacgggctcggccgtaccgaagtgcgc
ggctatgtccgcgatctgctcgaccagctggattcctcaggccgtttcgcctttatcaag
cttgcgaccggcgcgctgcgcatcggcgtttccgcccgtcttgccaagcaggcgctcgcc
gatctcggcggcaaggatgtcaccgagatcgagaccctctggcacggcctgcagccgcct
tacgaggcgctgttccagtggctggcgggcgacggcgacaaaccggcgctgacgacaccg
gcgatcttccattccgtcatgctcgccaatgcggtggaggagggggatctggcaggtctc
gacccggccgactacgccgccgaatggaaatgggacggcatccgcgtccagctgtcgcgc
tccggcgacaggcgcaagatctattcgcgctccggcgacgacatatcgggcgcctttccc
gacattctcgaggcgatcaatttttccggcgtcgtcgacggtgagttgctggtcggcggc
actgcccgctccaacagcccgacccgcaccttctccgacctgcagcagcggctgaaccgc
aagacggtgacggcgaagatgctcgacgactaccccgccttcatccgcgcctatgacatg
ctttttgacggcgaggaggatattcgcggccgcacctatgtcgagcgccgcgggcgtctt
tccgagatcatcgaccgcgccccccatgaccggttcgacctctcgccgctcgtgcctttc
tcctcatgggaggagctcgacgctctgcgtgccgccccgcccgatccggtcatcgagggc
gtgatgatcaagcggcgcgacagcatttaccaggccggccggatgaaaggcccctggttc
aagtggaagcgcaatccctataatgtcgatgcagtgctgatgtatgcccagcgcggccac
ggcaagcgctccagctattattccgatttcaccttcggcgtctgggccgatgacgaggac
ggcgaacagctggtgccggtgggaaaggcctatttcggcttcaccgatgccgaactcgag
ctgctcgacaagttcgtgcgcaacaacaccaccgagcgtttcggcccggtgcgcgccgtg
cgcgccgacagggatttcggcttcgtcgtcgaggtggccttcgagggcatcaaccgctcg
acgcggcacaaatcgggggtcgccatgcgcttcccccgcatcgcccgccttcgccccgac
aagccaccttacgaggccgaccgcctgcgcacgctggtcgccatgatcgatgcaaaaccg
ggttga

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