KEGG   Rhizobium sp. IRBG74: BN877_I0823Help
Entry
BN877_I0823       CDS       T02867                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rir  Rhizobium sp. IRBG74
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:rir00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    BN877_I0823
   03410 Base excision repair
    BN877_I0823
   03420 Nucleotide excision repair
    BN877_I0823
   03430 Mismatch repair
    BN877_I0823
Enzymes [BR:rir01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BN877_I0823
    6.5.1.6  DNA ligase (ATP or NAD+)
     BN877_I0823
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BN877_I0823
DNA replication proteins [BR:rir03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BN877_I0823
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BN877_I0823
DNA repair and recombination proteins [BR:rir03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BN877_I0823
   NER (nucleotide excision repair)
    Other NER factors
     BN877_I0823
   MMR (mismatch exicision repair)
    Other MMR factors
     BN877_I0823
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
820085..821710
Genome map
AA seq 541 aa AA seqDB search
MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPALLREL
VLERMDEVLFRYSYDYVGDLAETISLVWGNIGGADDSEAQDPRLGEVVTLMNSLGRTEVR
GAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFAGKDIIEIETLWHGLAPP
YTPLFAWLEGKADRPVLATPAIFHSVMLATPVADGDLDGLDPADYAAEWKWDGIRVQLSR
AGGTRKLYSRSGDDISGAFPDVLDAIDFEGVMDGELLIGGTARSNNLTRTFSDLQQRLNR
KTVTAKMLDDYPAFIRAYDLLFDGESDIRAQTYLQRRGRLSDIIEHAPHDRFDLSPLIGF
SSWQELDTLRAAPPDPVIEGVMIKRRDSTYQAGRAKGPWFKWKRDPYNIDAVMMYAQRGH
GKRSSYYSDFTFGVWAEGEDGEQLVPVGKAYFGFTDAELEVLDKFVRDNTVERFGPVRAV
RATPDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARLRADKLPAEADRLSTLVAMIDGVE
G
NT seq 1626 nt NT seq  +upstreamnt  +downstreamnt
atgaaagccttcgccactcttcttgaccgcctggttctcaccccgtcgcgcaatggcaag
ctgaagctgctgaccgattatttccgcgatacgcccgatcccgaccggggttacgggctg
gcggccattgccggcacgctggacctcaaaagcgtcaagccggccctgctgcgcgaactg
gtcttggagcggatggatgaggttctgttccgctattcctatgattatgtgggcgatctc
gccgaaaccatttcgctggtctggggcaatatcggcggtgctgacgattcagaggcacag
gatccgcgtcttggtgaagtggtgacactgatgaattcgcttggccgtacggaggtgcgc
ggtgcggtgcgtgatctcctggatcggctcgatacgtcttctcgtttcgctttcctcaaa
cttgccaccggcagcctgcgcatcggtgtttcggcccggctggcgcgtcaggcgctggcg
gattttgcggggaaagacatcatcgagatcgaaaccctttggcacgggctggcgccgccc
tatacgccgcttttcgcatggctcgagggcaaggcggaccgcccggtgctggcaacgccc
gccatcttccattcggtgatgctggcgacgccggtggcggatggcgacctcgatgggctg
gaccccgccgactacgccgccgaatggaaatgggacggtattcgtgtgcaattgtcccgc
gccggtgggacacggaaactctattcccgttcaggcgacgatatttcaggcgccttccct
gacgttcttgacgcgatcgatttcgaaggtgtgatggatggtgagctgctgattggcggc
acggcacggtccaacaatctcacccgaaccttttccgacctgcagcagcgactgaaccgc
aagacggtgacggcgaagatgctggacgactatcccgcctttatccgcgcctatgacctg
ctgttcgacggcgagagcgatatccgcgcgcagacctatctgcagcgtcgcggccggctg
tctgacattatcgaacatgcaccacatgaccgcttcgacctatcgccactgatcggcttt
tccagctggcaggagctcgatacgctacgcgccgcaccgcccgatccggtcatcgagggc
gtcatgatcaagcgccgcgacagcacctatcaggccgggcgcgctaaaggcccctggttc
aagtggaaacgcgatccttacaatatcgacgccgtcatgatgtatgcccagcgtggccac
ggcaaaagatcgagctattactccgatttcaccttcggtgtctgggcggagggggaggac
ggcgaacagctcgtgcctgtcggaaaggcttatttcggtttcaccgatgcggagctggag
gtgctggacaagttcgtgcgcgacaataccgtcgagcgtttcggcccggtgcgggcggtg
cgcgccacgccggatttcggtttcgtgcttgaagttgccttcgaaggcatcaaccgctcc
acccgccacaaatccggcgtcgccatgcggttcccccgcattgcccggctgcgcgccgac
aagttgccggccgaagccgacaggctttcaacactggtggcgatgatcgacggtgtggaa
ggctag

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