Rivularia sp. PCC 7116: Riv7116_0960
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Entry
Riv7116_0960 CDS
T02364
Name
(GenBank) RNA polymerase sigma factor, sigma-70 family
KO
K03090
RNA polymerase sigma-B factor
Organism
riv
Rivularia sp. PCC 7116
Brite
KEGG Orthology (KO) [BR:
riv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
riv03021
]
Riv7116_0960
Transcription machinery [BR:
riv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Riv7116_0960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_r3
HTH_Crp_2
HTH_3
HTH_23
HTH_24
KORA
Sigma70_ECF
MarR_2
HTH_8
HTH_Tnp_ISL3
HTH_17
HTH_11
GerE
HTH_Tnp_4
HTH_31
HTH_30
Trp_repressor
DUF1492
HTH_AsnC-type
Xre-like-HTH
HTH_28
SpoIIID
Phage_CI_repr
HTH_38
LacI
HTH_50
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AFY53535
UniProt:
K9R6K0
LinkDB
All DBs
Position
complement(1216071..1216850)
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AA seq
259 aa
AA seq
DB search
MSTTLLTKELKHEIWQLLREYQQSQSAEVRNKLVKLNFGLVRKEAYYWINQCHESFDDLL
QVGCLGLIRAIERFDISKGHAFSSFAIPYIRGEIQHYLRDKGVTVRIPRRWLAIQQQSAG
VSRSLREKYNRQPTDSEVAAALSISLEEWQEIKLAWVNRAPLSLDVPVYDGDEGSASLAE
LVPDHSYRSFQLAQEDQLRLQQALLQLENRTRQVLEFVFLHDLTQKQVAERLGISVVTVS
RRVKKGLNSLKHLMVSAED
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgtccactaccttactcacgaaagaactgaagcatgaaatttggcagttattgcgagaa
tatcagcaatctcagtcagccgaagttcgtaacaaactggtaaagcttaattttggactt
gtgagaaaagaggcttactactggataaatcaatgccacgaaagtttcgatgacttacta
caagtcggttgtctgggcttaattcgtgctattgaaagatttgatatctctaaaggtcat
gcctttagttcctttgcaattccatatattcgcggtgaaattcagcattacctccgagat
aaaggtgtgactgtaagaataccaaggcgttggctggcaatacagcagcagtcggcagga
gtttctcgttctttgcgagaaaaatataatcgtcagcctaccgactcggaagtagccgca
gcattgtctatttctcttgaagaatggcaagaaattaaattagcctgggtaaatcgcgct
cctttaagcttagatgtacctgtatacgatggagacgagggttcggctagtttggcagag
ttggttcccgatcatagctaccgtagctttcaactcgcacaagaagaccaattacgcttg
caacaagcgttacttcagctagaaaatcgtactcgtcaagttttggaatttgtattttta
cacgatttaacgcaaaagcaagtggctgaaagacttggtatcagcgtagttacagtttct
cgtagagtcaaaaaagggcttaattccctcaaacacctaatggtttcagcagaggattag
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