Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_5331
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Entry
Rleg_5331 CDS
T00926
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg_5331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlg03400
]
Rleg_5331
Enzymes [BR:
rlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg_5331
DNA repair and recombination proteins [BR:
rlg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg_5331
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACS59535
UniProt:
C6B627
LinkDB
All DBs
Position
pR132501:738176..739216
Genome browser
AA seq
346 aa
AA seq
DB search
MKRTRRPLPLLDESHSTLHSRPIRKRDPDQPGLPFDPMPSRVEPCLALLKPTVPIGPDWL
YEVKLDGYRLAIHVEPKGVRVITRGGHDWTHRFPTIAAAAKELGVTTAILDGEAVVLDDN
GRSDFGALQRSLGGRGGKRVSTESVLVAFDLLYLDGHDLTGTELDVRRHLLEDLIPGGDD
QTIRLSEQIELPAEELLEHACHHHLEGIIAKHRDRPYGSGRTGDWLKIKCVQSESFMIVG
YEQSASARGGIGRLLLAGRRGLDWIYVGSVGTGFGARDAEYLKKTLDRLKTNRPVVPLNG
KRLVLVQPTLIAEIEFRGWTDDGNLRHASYKGLREVQDNAAVFDMT
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcacgcgccgcccactgcccttgctcgacgagtctcactcaacgctgcattct
cgtccgatccgcaaacgcgatcctgaccagcccggcctgcccttcgatccaatgccgtcg
cgcgtcgagccctgcctcgcgctgctgaagccgactgtgcccattgggccggattggctc
tatgaggtgaagctggatggctatcgattggcaatccacgttgaaccgaagggcgtgcgg
gtcatcacccgtggcggccatgactggacccatcgcttccccaccatcgccgcggcagcg
aaagagcttggcgtaacgaccgccattctcgatggcgaggccgttgtactcgatgataac
ggccgatcggattttggcgccctgcagcgttcgctcggcgggcggggaggcaagcgagta
tcgaccgagtcggtcctcgtcgccttcgaccttctctatctcgatggacacgatctgacc
ggcaccgagcttgacgtacgccgacacctgctcgaagacctgataccgggcggcgacgat
cagacgatccgcctctccgagcagatagagctgccggccgaagaactcctcgagcacgcc
tgccatcatcatctggaaggtatcatcgccaagcatcgcgaccggccctacggcagtggc
cgtacgggcgactggctgaagatcaaatgcgtccagagcgagagcttcatgatcgtcggt
tatgagcagtccgcatccgcccgcggcggcatcggcaggctattgctggccggcagacga
gggctcgactggatttacgttggctccgtcggaactggtttcggtgccagggatgctgaa
tacctgaaaaagacgctggaccggttaaagacgaaccggccggtcgttccgctgaatggc
aagcgcctcgtcctcgtccagccgacgctgatcgctgagatcgagtttcgcggctggacg
gatgacggcaatctccgccatgcttcgtacaaggggctgcgcgaggtccaggataatgcc
gcagtcttcgatatgacctaa
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