Roseobacter litoralis: RLO149_c039300
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Entry
RLO149_c039300 CDS
T01572
Name
(GenBank) putative exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rli
Roseobacter litoralis
Pathway
rli03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RLO149_c039300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rli03400
]
RLO149_c039300
Enzymes [BR:
rli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RLO149_c039300
DNA repair and recombination proteins [BR:
rli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RLO149_c039300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AEI95832
UniProt:
F7ZDP7
LinkDB
All DBs
Position
complement(3983079..3983867)
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AA seq
262 aa
AA seq
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MAFSLATWNINSVRLREGLVLKLMTEEAPDVLCLQECKSPVDKMPLDAFAAAGYAHVVAR
GQKGYNGVAILSKIPMEEAAAEDFAALGHARHIAGRLENGVTVHNFYVPAGGDVADREVN
EKFGQKLDYLTEMRDWFHTQKPEKSILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHL
AQTQDAGGWVDITRQDIPEGKLFSWWSYRAADWDAADKGRRLDHVWATSDIAAAGHDSRI
VRGARGWEKPSDHAPVFAQFDL
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcgttagcaacctggaacatcaattctgtgcggttgcgtgaaggcctcgtg
ctgaaactcatgaccgaagaagcgcccgatgtcctgtgcctgcaggaatgcaaaagccct
gtcgacaagatgccgttggatgctttcgccgccgcaggttacgcgcatgtcgtggcacgc
ggccaaaagggctacaacggggtggccattctgtccaaaatcccgatggaagaagccgct
gccgaagactttgctgcattgggacacgcgcgccacatcgcgggccgattggaaaacggc
gtgacggtgcataacttttacgtcccagcaggcggagacgtcgcggaccgggaagtgaac
gaaaaattcggtcagaaactggattacctgacggaaatgcgcgactggtttcatacgcaa
aagcctgaaaaatcaatccttgtgggtgatttgaacattgccccacgcgaagacgatgta
tgggatcataaaaagctgctgaaagttgtcagccacacgcccatcgaggttgagcatctg
gcgcaaacgcaagacgccggtggctgggtcgatatcacccggcaggacattcctgagggc
aagctcttcagctggtggtcctaccgcgctgccgattgggatgcggcggacaaggggcgg
cggctggatcatgtctgggccacgtcggatatcgccgcagcgggtcacgacagccgcatc
gttcgcggtgcgcgaggctgggaaaagcccagcgatcacgccccggtttttgcgcaattt
gacctttga
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