Cupriavidus metallidurans: Rmet_1428
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Entry
Rmet_1428 CDS
T00351
Symbol
ligA
Name
(GenBank) DNA ligase, NAD(+)-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03030
DNA replication
rme03410
Base excision repair
rme03420
Nucleotide excision repair
rme03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rmet_1428 (ligA)
03410 Base excision repair
Rmet_1428 (ligA)
03420 Nucleotide excision repair
Rmet_1428 (ligA)
03430 Mismatch repair
Rmet_1428 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rme03032
]
Rmet_1428 (ligA)
03400 DNA repair and recombination proteins [BR:
rme03400
]
Rmet_1428 (ligA)
Enzymes [BR:
rme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rmet_1428 (ligA)
DNA replication proteins [BR:
rme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rmet_1428 (ligA)
DNA repair and recombination proteins [BR:
rme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rmet_1428 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rmet_1428 (ligA)
MMR (mismatch excision repair)
DNA ligase
Rmet_1428 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rmet_1428 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ABF08311
UniProt:
Q1LNG5
LinkDB
All DBs
Position
1545334..1547499
Genome browser
AA seq
721 aa
AA seq
DB search
MTAKKQGAQASASAPSGDSPAERAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQA
LEAEHPELLTPDSPTQRVGGAPLSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGR
ATAAAPAAFATPAAPADDLFSAADAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLV
QAATRGDGETGEDVTANVRTIKAIPLKLRGTAPSVLEVRGEVFMYRADFDKLNARQAESG
EKTFVNPRNAAAGSLRQLDPRITAKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLP
VCDERRVVRGAQGLLSFHREVGERRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALA
HKFPAQEMTTTVEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHIG
DTVIVRRAGDVIPEVVAVVLERRPADARAFVMPTECPVCGSHVERLEGEAIARCTGGLIC
AAQRKQALLHFAQRRAMDIEGLGDKVVEQLVDLGIVRTPADLYKLGVAKLAALDRMADKS
ASNLVAAIEQSRETTMNRFIFALGIRHVGEATAKDLAKHFGKLDNLLAADEAALLEVNDV
GPVVAQSIANFIAEPHNVEVIEQLRAAGVHWAETEPTARAPLPLAGKTFVLTGTLPTMSR
EDAKEKLEAAGAKVAGSVSKKTDYVVAGAEAGSKLEKAQTLGVAVLDEEGMLKLLAEVGA
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaagaaacaaggcgcgcaggcttcggcctccgcgccgtccggcgattccccc
gccgagcgcgcgcaatggttgcgcgaagaactggagcgctacagctaccagtattacgtg
ctcgatgcgccgacgattcccgacgccgactacgatgcgctgttcatcgagttgcaggcg
ctggaagccgaacatcctgagctgctgacacccgattcccccacgcagcgcgtgggtggt
gcgccattgtcggcgttcgactcggtgcgccaccgcgtgccgatgctgtcgctcaacaat
ggcttcgaggacgaggacgtcatcaacttcgaccggcgctgcgcgcagggcctcggccgt
gccacggccgcagcacccgcagcattcgcgacacccgccgcgccggctgacgatctgttc
agcgcggccgatgccgccgaggcagccgcaaacaccgccgggaatgccgtcgagtacgcc
tgcgagctgaagttcgacgggctcgcgatgtcgctgcgatacgagaacggaacgctcgtg
caggccgccacgcgcggcgacggcgagacgggcgaagacgtgaccgcgaacgtgcgcacg
atcaaggcgattccgctcaagctgcgcggcacggccccgtccgtgctggaggtgcgcgga
gaggtgttcatgtatcgcgccgatttcgacaagctcaacgcgcgccaggccgaatcgggc
gagaagacattcgtcaatccgcgcaacgcggcggcgggcagccttcgccagcttgatccg
cgtatcacggccaagcgcccgctttcgttctttgcctatggcgtgggcgagatggaaggc
ttcgaccgtccgggcacgcacagcgcaatgcttgacggctttgccaagctcggtttgcct
gtttgcgacgagcgacgtgtggtccggggcgcccagggcctgctgtcattccatcgcgag
gttggcgagcgtcgtgaccagttgccgtacgacatcgacggcgtggtctacaaagtcaat
gcgattgccgaacaggaacagctcggctttgtctcgcgcgcgccgcgtttcgcgctggcg
cacaagtttcctgcacaggagatgaccactacggtcgaggacatcgaggtccaggtcggg
cgcaccggtgcgatcacgccggtggcgcgactggcgccagtgtttgttggcggggtcacc
gtgaccaatgccacgctgcacaacgaggacgagatccggcgcaaggacgtgcatatcggc
gacacggtgatcgtgcgccgcgcgggtgacgtgattccggaggtggttgccgtggtgctg
gagcgccgcccggcggatgcccgtgcgttcgtgatgccgactgaatgcccggtctgcgga
tcgcacgtggaaaggctcgaaggcgaggcgattgcacgctgcacgggcgggctgatctgc
gctgcgcaacgcaagcaggcgctgctgcatttcgcgcagcgtcgggcaatggatatcgaa
gggctgggcgacaaggtggtggagcaactggtcgacctgggcatcgtgcgcacgcctgcc
gatctctataagctcggcgtggcgaagctcgcggcgctggaccggatggccgacaagtcg
gcatcgaacctggtggcggcgatcgagcagtctcgcgagaccacgatgaaccgctttatc
ttcgcgctcggcatccgtcatgtaggagaggccaccgccaaggatttggccaagcacttc
ggcaagctggacaacctgctggccgcggacgaggccgccttgctcgaagtcaacgacgtg
ggccccgtggtggctcagtcgatcgccaacttcattgccgaaccgcacaatgtcgaagtt
atcgaacagttgcgggcggcgggtgtgcactgggccgagacagagccgactgcgcgtgcg
ccgctgcccctggctggcaagacgttcgtgctgaccggcacgctgccgacgatgtcccgc
gaggacgccaaggagaagctggaagccgctggcgccaaggtggcgggttcggtgtcgaag
aagaccgactacgtagtggccggggccgaggcgggcagcaagctcgagaaggcgcagaca
ctgggcgtggcggtgctggacgaggaagggatgttgaagttgctggccgaggttggcgca
gcctga
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integrated database retrieval system