Rothia mucilaginosa: RMDY18_11420
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Entry
RMDY18_11420 CDS
T01144
Name
(GenBank) helicase subunit of the DNA excision repair complex
KO
K03702
excinuclease ABC subunit B
Organism
rmu
Rothia mucilaginosa
Pathway
rmu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RMDY18_11420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmu03400
]
RMDY18_11420
DNA repair and recombination proteins [BR:
rmu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RMDY18_11420
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RMDY18_11420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_16
DUF815
AAA_5
nSTAND3
AIG1
Sigma54_activat
DUF87
AAA_7
FEZ
Gp49
Motif
Other DBs
NCBI-ProteinID:
BAI64974
UniProt:
D2NTJ8
LinkDB
All DBs
Position
complement(1268250..1270418)
Genome browser
AA seq
722 aa
AA seq
DB search
MSYAPQINRVVAPFEVVSPFQPAGDQPKAIAELTERVQNGEKDIVLMGATGTGKSATAAW
LIEAVQRPTLVLVQNKTLAAQLANELRELLPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK
DSSINEEVERLRHSATNSLLTRRDVVVVATVSCIYGLGTPEEYVAQMVTLRRGEEVDRDE
LLRQFVAMQYARNDMDFHRGTFRVRGDTVEIIPMYEENAIRIEFFGDEIEAIYTLHPLTG
EVIREEEEMYVFPASHYIAGAERMAKAITSIEDELRERLQTLESQGKLLEAQRLRMRTTY
DLEMMEQMGFCNGIENYSRHIDGRAPGSAPNCLLDYFPDDFLLIIDESHVTVPQVGAMYE
GDMSRKRTLVEHGFRLPSAMDNRPLKWEEFLERIGQTIYLSATPGKYELSQADGYVEQII
RPTGLIDPEIVVKPTKGQIDDLLEEIRVRVERDERVLVTTLTKRMAEDLTEYLLQHGVKV
QYLHSDVDTLRRVELLRELRLGTFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTT
SLIQTIGRAARNVSGQVHMYADKITDSMRVAIDETNRRREIQQAYNREHGIDPQPLRKKI
ADITDVLAREEEDTRELLQQRKSGKKGARTVSAGAKTGSATSSKIATSTPESEELLARAE
ARVRADGLAAAPAEDLLDLIEQMNEQMRVAAENLQFELAARLRDELADLKKELRLMKEAG
HA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagttacgcaccccagattaaccgtgttgttgccccctttgaggtagtcagccccttc
cagcctgccggtgaccagccgaaggctatcgccgagcttaccgagcgtgtgcagaacggt
gagaaggacattgtgctgatgggcgctaccggtaccggtaagtccgcgaccgcagcctgg
ctgattgaggcggtgcagcgtccgactctggtgctcgtgcagaataagactctggcggcg
cagctggcgaatgagctgcgtgagctgctgccgaataatgcggtggagtattttgtctcc
tactacgactactaccagcctgaggcgtacgtgccgcagaccgatacgttcattgagaag
gactcctccattaatgaggaggtggagcgtctgcgccactcggcgacgaactccctgctg
actcgccgtgacgtggtggtggttgcgaccgtgtcctgcatttacggtctgggcacgccc
gaggagtacgttgcgcagatggtgactttgcgtcgcggtgaggaggttgaccgcgacgag
ctgttgcgccagttcgtggcgatgcagtacgcgcgtaacgatatggactttcaccgtggc
acgttccgtgtgcgcggcgataccgtcgaaatcatccccatgtacgaggagaacgcgatc
cgcattgagttcttcggcgatgagattgaggcgatttacaccctgcacccgctgaccggc
gaggtgattcgcgaggaagaagaaatgtatgtcttccccgcaagccactacatcgccggt
gccgagcgtatggcgaaggctattacctccattgaggatgagctacgcgagcgcctgcag
accctcgagtcccagggcaagctgctggaggcgcagcgtctgcgtatgcgcaccacctac
gacctggaaatgatggagcagatgggcttctgcaatggtattgagaactactcgcgccat
attgacggtcgtgcccctggtagcgccccgaactgtctgctggattatttcccggatgat
ttcttgctgattattgatgagtcgcacgtgacggtcccgcaggttggtgccatgtacgag
ggcgatatgtcccgtaagcgcaccctggttgagcacggtttccgtctgccgtcggcgatg
gataaccgcccgctgaagtgggaggagttcctggagcgtatcggtcagacgatttacctt
tcggcgacccccggtaagtatgagctgtcgcaggctgatggttatgtggagcagattatt
cgacccaccggcctgattgacccggagatcgtggtcaaaccgaccaaggggcagattgat
gatttgcttgaggagattcgcgtgcgcgttgagcgtgatgagcgtgtgctggtcacgacc
ctcaccaaacgcatggcggaggatctgaccgagtacctgttgcagcacggcgtgaaggtg
cagtacctgcactctgacgtggataccctgcgccgcgtggagcttctgcgtgagctgcgc
ctgggcacctttgatgtgctggttggtattaacctgctgcgtgagggcctggacctgccc
gaggtgtccctggttgcgattctggatgccgataaggaaggcttcctgcgttcgaccact
tcgctgattcagacgattggtcgtgcggcgcgtaacgtgtccggtcaggtgcacatgtac
gccgataagattacggattctatgcgcgtggcgattgatgagacgaaccgccgccgcgag
attcagcaggcgtacaaccgtgagcacggcattgacccgcagccgctgcgtaagaagatt
gccgatattacggatgtgctcgcccgcgaggaagaggacacccgcgagcttctacagcag
cgtaagagcggtaagaagggggcccgcacggtgagcgcgggtgcgaagaccggttctgcg
acctcgtcgaagattgccacgagcaccccggagtcggaggagcttctcgcccgtgcggag
gcgcgcgttcgtgccgacggcctggcggcggcacccgccgaggacctgctggatttgatt
gagcagatgaacgagcagatgcgcgtggcggcggagaacctgcagtttgagttggcggcg
cgtctgcgtgatgagcttgccgatttgaagaaagagctgcgcctgatgaaggaggcgggt
cacgcctaa
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