Rattus norvegicus (rat): 26955
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Entry
26955 CDS
T01003
Symbol
Afdn
Name
(RefSeq) afadin
KO
K05702
afadin
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04014
Ras signaling pathway
rno04015
Rap1 signaling pathway
rno04024
cAMP signaling pathway
rno04520
Adherens junction
rno04530
Tight junction
rno04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
26955 (Afdn)
04015 Rap1 signaling pathway
26955 (Afdn)
04024 cAMP signaling pathway
26955 (Afdn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
26955 (Afdn)
04530 Tight junction
26955 (Afdn)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
26955 (Afdn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
PDZ_2
Yop-YscD_cpl
ASPP1-2_RA
Motif
Other DBs
NCBI-GeneID:
26955
NCBI-ProteinID:
NP_037349
RGD:
708561
Ensembl:
ENSRNOG00000023753
UniProt:
O35889
LinkDB
All DBs
Position
1:58041065..58170505
Genome browser
AA seq
1829 aa
AA seq
DB search
MSAGGRDEERRKLADIIHHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGERRLDIDEKPLVVQLNWNKD
DREGRFVLKNENDAIPAKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKKREKEALRQA
SDKEERPSQGDDSENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRSS
DGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAESLEKYGLEKENPKDYCIARV
MLPPGAQHSDERGAKEIILDDDECPLQIFREWPSDKGILVFQLKRRPPDYIPKKMKKHVE
GKPLKGKDRADGSGYGSALPPEKLPYLVELSPGRRNHFAYYSYHTYEDGSDSRDKPKLYR
LQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISET
TMLQSGMRLQFGTSHVFKFVDPIQDHVLSKRSVDGGLMVKGPRHKPGAVQETTFELGGDI
HSGTALPASRSTTRLDSDRVSSASSTAERGMVKPMIRLDQEQDYRRRESRTQDAAGPELM
LPASIEFRESSEDSFLSAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQHRPDISPTERT
HKAIAVVNKMVSMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRITL
DAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENSLQRPKIDDVLHTLTGAMSLL
RRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGAIIRQQLGHIEAWAEKQ
GLELAADCHLSRIVQATTLLTMDKYVPDDIPNINSTCFKLNSLQLQALLQNYHCAPDEPF
IPTDLIENVVAVAENTADELARSDGRDVQLEEDPDLQLPFLLPEDGYSCDVVRNIPNGLQ
EFLDPLCQRGFCRLVPHTRSPGTWTIYFEGADYESHLMRENTELTQPLRKEPEVITVTLK
KQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER
AAELMTRTSSVVTLEVAKQGAIYHGLATLLNQPSPMMQRISDRRGSGKPRPKSEGFELYN
NSAQNGSPESPQMPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKSPYTSGT
AAKITSVSTGNLCTEEQTPPPRPEAYPIPTQTYTREYFTFPASKSQDRMAPVQNQWPNYE
EKPHMHTESDHASIAIQRVTRSQEELREEKVYQLERHRVESGMDRKCDSDMWINQSSSVE
SSTSSQEHLNHSSKSVTPASTLTKSGPGRWKTPAAVLPTPVAVSQPIRTDLPPPPPPPPA
HYTSDFDGISMDLPLPPPPANQAAPQSAQVAAAERKKREEHQRWYEKEKARLEEERERKR
REQERKLGQMRTQSLNPASFSPLATQAKPEKPSTLQRPQETVIRELQPQQQPRTIERRDL
QYITISKEELSSGDSLSPDPWKRDAREKLEKQQQMHIVDMLSKEIHELQNKGDRTAEESD
RLRKLMLEWQFQKRLQESKQKDEDDDEEEDDDVDTMLIMQRLEAERRARLQDEERRRQQQ
LEEMRKREVEDRVRQEEDGRHQEEERVKRDAEEKRRQEEGYYSRLEAERRRQHEEAARRL
LEPEEPGLSRPPLPQDYEPPSQSSAPSAPPPPPQRNASYLKTQVLSPDSLFTAKFVAYDD
DDEEENYVPAGPNSYSGSAGTTAGTYDAPRDTREKLSRSQDADLPGSSGAPENLTFRERQ
RLFSQGQDVSDKVKASRKLTELENELNTK
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaagagcggcggaagctggccgacatcattcaccactgg
aacgccaaccggctggacctgttcgagatcagccagccgaccgaggatttggagtttcat
ggagtcatgagattttattttcaagataaagctgctggaaactttgcaacaaaatgtatt
cgggtctctagcacagcaaccactcaagatgtcattgaaacactggcagagaagttccgc
cctgatatgcgcatgctctcctctcccaagtactccctctatgaagtgcatgtcagtgga
gaaagaagattggacattgatgagaaacctctagttgtacagttgaattggaacaaagat
gatcgggagggtagattcgtccttaagaacgagaatgacgccattcctgccaagaaggct
cagagtaatggacctgagaagcaggagaaagaaggtgttattcagaacttcaaaagaact
ctgtcaaagaaagaaaagaaggaaaaaaagaagagagagaaggaggctttgagacaagcc
tctgataaggaagaaaggccttctcaaggggatgacagtgagaattctcgtctggctgct
gaagtttacaaagacatgcctgaaaccagctttactcgaacgatttctaatcctgaagtt
gttatgaaacggcggcggcagcaaaaactggagaagagaatgcaagagtttcggagctca
gatgggcggcccgactcgggtggaacactgagaatctatgcagacagtttaaaaccaaat
attccatacaagacaatcctgctgtctactacagatcctgcagactttgctgtagcagag
tccttagagaagtatggtctggaaaaagagaaccccaaggactactgcattgctcgggtt
atgcttcctcctggagcccagcattctgatgagagaggtgctaaggaaataattcttgat
gacgatgaatgccctttacaaatcttcagggaatggccaagtgacaaagggattttagtc
tttcagttgaagaggagaccaccggactacattccaaagaaaatgaagaaacatgttgaa
ggcaagccattgaaggggaaagatagagctgacgggtctggctacggctctgctcttcct
cctgagaagctgccctacttagtagagctcagcccagggagaaggaatcactttgcctac
tacagctatcacacttacgaagatggctctgactccagagacaagccaaagttataccgc
cttcagttaagtgtgactgaagttgggacagagaagttcgatgacaattctattcagctg
tttggtcctggaattcagccccatcactgtgatctcaccaacatggatggagtggtcact
gtgacacccagaagtatggatgcagagacctatgtggatggtcagcgcatctcagagacc
acaatgctacagagtggcatgagactgcagtttggcacctcgcatgtgtttaagtttgtg
gaccccatccaggaccacgttctttccaagagatctgtggatggaggcctgatggtcaag
ggcccaagacataaacctggagccgttcaagagacaacctttgaattgggaggagatatc
cacagtgggacagcattgccggcaagcaggagcactactagattggacagtgacagggtg
tcctctgcctctagcacagctgagcgagggatggtgaagccaatgatccgactggaccag
gagcaggactaccggcgaagagaaagcaggactcaggatgctgctgggcctgaactgatg
ctgcctgccagcattgaattccgggaaagctctgaagactcttttttatctgccattata
aactataccaatagctctacagttcattttaagttgtcacctacatatgtgttatacatg
gcatgccggtatgtattgtccagccagcacaggcccgacatcagtcctacagagcggaca
cataaggccattgctgttgtgaacaagatggtgagcatgatggaaggggtcatccaggaa
gtagaccaggttgatcagaaacagaagaacattgcaggagcacttgctttctggatggca
aatgcatctgagcttctcaacttcatcaagcaggaccgagaccttagtcggattactctg
gatgcccaggatgttctagcacacttggttcagatggcatttaagtacttggttcactgc
cttcagtcagaacttaataactacatgccagcctttctggatgatcccgaggagaacagt
ctgcagagaccaaaaatagatgatgtgctgcatacgctcacaggagccatgtccttgttg
cggcgctgcagagtcaatgccgccttgaccatccagctgttctctcagcttttccacttc
atcaatatgtggctattcaacagactggtgactgacccagattcaggcctgtgttcccac
tactggggcgcaattatccgccagcagctggggcatattgaagcttgggcagagaagcag
ggactagagttggcagctgactgtcacttgagcaggatcgtgcaggctactacgttgctt
acaatggataagtatgtacctgatgacattccaaatataaacagcacatgctttaagtta
aattctctgcagcttcaagccctcttacagaattaccactgtgcacctgatgagcctttt
attcctacggatctcatagaaaatgtcgtggctgttgctgagaacacagctgatgagctt
gcccgcagtgatggcagagatgtgcagttagaggaggaccctgatctacaactgcccttt
cttctgccagaagatggctattcctgtgatgttgtcagaaacattccaaatggtttacaa
gaatttttagaccctctgtgccagagaggattttgcaggttggttcctcacacacgttct
ccaggtacctggacaatatattttgaaggagcagattatgaaagtcacctcatgcgtgag
aacacagaactgacccagcctctgaggaaggagcctgaggtaatcactgtgaccctgaag
aagcagaatggaatgggcctcagcattgttgcagcaaagggtgctggccaggataaactg
ggaatctacgttaagtccgttgtcaaaggaggtgctgcagatgtggatggacgcctagct
gctggtgaccaactccttagtgtggatggacgaagtctggttggactttctcaggaaagg
gcagcagaactcatgacaagaaccagttccgtggtaacactggaagttgcaaagcaaggc
gctatctatcacggactggccactctccttaaccagccatcacccatgatgcagagaatt
tcagatcgtcgtggctcaggtaaacccagaccaaagagcgaaggttttgagctctataat
aattcagctcaaaacggctccccagagagtcctcagatgccttggacagagtacagtgag
ccaaagaagctgcctggtgacgacaggctgatgaaaaacagagctgaccaccgttccagc
cccaatgtggcaaatcagccccctagtcctggagggaagagtccatatacctctggaaca
gcagctaaaataacatctgtctctactggaaacctctgcactgaggagcagacccctcca
cctagacctgaagcctatcctatccctactcagacatataccagagagtattttaccttt
ccagcttcaaagtcgcaggatcggatggctcctgttcaaaaccagtggccaaattatgag
gaaaaaccacacatgcacacagaaagtgatcatgccagtattgcaatccagcgtgttacc
cgttcccaggaagagcttcgggaagagaaggtttaccaacttgagcgtcatcgagtagag
tcaggcatggatcgcaagtgtgacagtgatatgtggatcaatcagagctcctcagtggaa
tctagcacgtctagccaggagcacctgaaccattcctccaagtcagttacccctgcttcc
actctgaccaagagtggtcctggtcgttggaaaaccccagcagctgtgctccccacccct
gtggctgtctcccaacccattcgaacagacctccctccaccaccacctccaccacctgcc
cactacaccagtgattttgatggtatttcaatggatttgcccctcccacctcctcctgcc
aaccaagcagctccccagtctgctcaggtggctgctgcagagaggaaaaagagagaggag
catcagaggtggtatgaaaaagagaaggcccgcctggaggaggaacgagagagaaagcgc
agggagcaagagaggaagttggggcagatgcgcactcagtccctgaaccctgcttccttc
tctcctttggccacacaggccaagccagaaaagccttccacactgcagaggccccaagaa
acggtcattcgggagctgcagccccagcagcagccccgtactattgagcgcagggatctg
cagtacataaccatcagtaaagaggagctgtcctctggggatagtctgtctccagaccca
tggaaacgagatgccagggagaagctggagaagcaacagcaaatgcacattgtagacatg
ctaagcaaggagatccatgagctgcaaaacaagggggaccgtactgcagaggagagtgac
cgcctgcggaagcttatgctggagtggcagttccagaagagactacaggagtccaagcag
aaggatgaggatgatgatgaagaggaagatgatgatgttgacaccatgctgatcatgcag
cgactggaggcggagcggagagccaggttgcaggatgaagagcgcaggcgccagcaacag
ttggaagagatgcggaaacgagaagttgaagacagagtaagacaagaggaagatggacgc
catcaggaggaggagcgagtaaagagagatgctgaagaaaagaggcgacaggaagaaggg
tattacagccgcctagaagctgagaggcgcagacagcatgaagaggcagcacgcaggttg
ctggagcccgaagaacccgggctgagccgacctccacttccacaggactacgagccccca
tcccagtcctcagcacccagtgcccctcctcccccacctcagcgaaatgcctcctacctc
aaaacacaggtcctctccccagactcgctgttcactgccaagtttgttgcgtatgatgat
gatgatgaggaggagaactacgtcccagcaggaccaaactcttattcgggatctgctggc
acaactgctggaacttatgatgctcctcgggacacaagagaaaaactcagtagaagccaa
gatgcagacttacctggcagttctggagcccctgaaaacctgacatttagagagcgtcag
cgcctcttttcacaaggtcaagatgtgtcagacaaagtgaaagcttctcgtaaattaaca
gagcttgagaatgaactcaacaccaagtga
DBGET
integrated database retrieval system