Rattus norvegicus (rat): 317221
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Entry
317221 CDS
T01003
Symbol
Rtl3
Name
(RefSeq) retrotransposon Gag-like protein 3
Organism
rno
Rattus norvegicus (rat)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4939
Ty3_capsid
zf-CCHC
Retrotrans_gag
DivIC
SSXT
KASH_CCD
HALZ
zf-CCHC_2
bZIP_2
Csm1_N
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
317221
NCBI-ProteinID:
NP_001388081
RGD:
1564805
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Position
X:complement(76020183..76023848)
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AA seq
622 aa
AA seq
DB search
MVEDLAASYVALKLENEILQAQVKRLTEENAALQAQIPELQKSGAAKEHEPPRKPSEAQE
LPESPELLELPAARASQNPWEPPATTEPREPTKIREPREPSAISKLRGPPEIKEPREPST
IRKPRSPSEIKEPRELSAIRDFMGIPEIQEPQEPQEPQEPQETNESGGPSAITEFRGSPE
IKKSHSSPKFKECWGLQEFPKVKESWEPPESLDSTTAWGLQELSKYKKAHKPPELQDLAA
WNPATVKEHQEIQKALESPATQKPQASPRGYDLPAVGEAEPTDNQGTPALKELQNSQLHN
PTNDAEPQTVPEHQETSSQPEPLEHPATQETLEPQVLQEPLDPSDAKEFLELSVPEESLE
GLIVVRTGTEQAHHEIEAPTLPLEYPLAFSEDFQKLSEFLVQLNSYLRTRGYPTEAALVS
FVGSFFSGEAGRLFQPLLDSQTSLLEQFERLLRALQDTFDNPDSLEVANQGLPQLRQGEG
LAPRYSTRFHLIAQELNLGESTLCIQFQEELASSIQNELSCISPVTNLSDVTIECVTLEE
KASGGADSSSSSSEEENGSESPPTENQPVQATSNRPHLSEAERARRREGHLCLYCGHPGH
FARDCPVKPQRAQQAGNMEARR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggtagaggacttagcagcttcctatgttgctctgaaattggagaatgaaattctgcag
gctcaagtgaagaggctcacggaagaaaatgctgccctccaggcccagataccagagctc
cagaaatccggagcagccaaggagcatgaaccaccccgaaagccctcagaggcccaagag
ctcccagagtccccagagctactggaacttccagcagccagggcttcacaaaacccctgg
gaacccccagcaaccacagagcccagggagcccacaaagatcagagagcccagggaaccc
tcagccattagcaagctcaggggacccccagagatcaaggagcccagggaaccttcaacc
attagaaagcccaggagcccttcagagatcaaggagcccagggaactttcagccatcaga
gacttcatgggaatcccagagatccaggagccccaggagccccaggagccccaggagccc
caagagaccaatgagtctggaggaccctcagccatcacagagttcaggggatccccagag
atcaagaagtcccattcatccccaaagttcaaggagtgctggggactccaggagtttcct
aaggtcaaggagtcctgggagcccccagagtccctggattccacaacagcctggggactc
caagagctttcaaagtacaagaaggctcacaaacccccagagcttcaggatctcgcagcc
tggaaccctgcaacagtcaaggaacaccaggagatccagaaggctctggagtccccagca
acccagaagccccaggcatccccaaggggttatgatctcccagcagtcggtgaggcggag
cccacagacaaccagggtaccccagccctcaaggagctccagaattcacagctccacaac
cctacaaatgatgcggagcctcagacggttccagaacaccaggagacctcatcacagcct
gagccccttgagcatccagctacccaggagactctggagcctcaggtgctccaggagccc
cttgacccctcagatgccaaggagttcctagaactctcagtacctgaagagtccctagag
ggcctaatagttgtgagaacaggaacagaacaggctcaccatgaaatagaggctccaact
ttgcccctagagtaccctttggccttcagtgaggattttcagaaactctctgagttttta
gttcagttgaacagttacctaagaaccagagggtatcccactgaagcagctctcgtgagc
tttgttggcagcttcttctcaggtgaggcaggaaggttgttccagcccttattagatagc
caaacctccctgctggagcaatttgaacggctcctgcgagcgcttcaagatacttttgac
aatccagacagtttggaagttgctaaccagggcctccctcagcttcgccaaggagaaggc
cttgctcccagatactcaacccgtttccacctcattgctcaagagttaaatttgggtgaa
agcacactctgcatccaatttcaagaagagcttgccagttctattcaaaacgaactgtct
tgcataagtccagtcaccaacctatctgatgtgaccattgagtgtgtcactctagaagag
aaggcaagtggtggggctgattccagttcatcatcctctgaagaggaaaatgggtccgag
agtccacccactgaaaaccagcctgttcaagctacaagtaatcgccctcatctcagtgag
gctgaacgggccagacgccgcgaaggtcacttgtgcctctactgtggccatcctggtcat
tttgccagagactgccctgttaagcctcagcgtgcccagcaggcgggaaacatggaggcc
cggcggtaa
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