Rattus norvegicus (rat): 363633
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Entry
363633 CDS
T01003
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03020
RNA polymerase
rno03420
Nucleotide excision repair
rno05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
363633 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
363633 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
363633 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rno03021
]
363633 (Polr2a)
03400 DNA repair and recombination proteins [BR:
rno03400
]
363633 (Polr2a)
Enzymes [BR:
rno01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
363633 (Polr2a)
Transcription machinery [BR:
rno03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
363633 (Polr2a)
DNA repair and recombination proteins [BR:
rno03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
363633 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
363633
NCBI-ProteinID:
NP_001413970
RGD:
1587326
Ensembl:
ENSRNOG00000028834
LinkDB
All DBs
Position
10:complement(54951162..54977179)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPEDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccctccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggcgtcctgagtccggatgagttgaagcggatgtctgtgacagagggtggt
atcaaatacccagagacaacagagggtggtcgccccaaacttgggggactaatggatcca
cgacagggggtgattgagcggactggccgttgtcaaacatgtgcaggaaacatgaccgag
tgtcctggccactttggccacattgaactggccaagcctgtgtttcatgtgggcttcctg
gtgaagacaatgaaggttttgcgctgtgtctgcttcttttgctccaaacttcttgtagat
tctaacaacccgaagattaaggacatcctggccaaatctaaggggcagcccaagaaacgg
cttacacatgtctatgacctttgcaagggcaaaaacatctgtgaaggtggagaggagatg
gacaacaagtttggtgtggagcagcctgagggggatgaggatctgaccaaagaaaagggc
catggtggctgtgggcgttatcagccccggatccggcgctctggcctggagttgtatgct
gaatggaaacatgttaatgaggactctcaggagaagaagatcttgctgagtccagaacga
gtgcatgaaatcttcaaacgcatctcagatgaggagtgttttgtgctgggcatggagcct
cgctatgcccggcctgagtggatgattgtcacggtgttgcctgtgcctcctctctctgtg
cgacctgctgtggtgatgcaaggttctgctcgaaaccaggatgatctgactcacaaactg
gctgacattgtgaagatcaacaatcagctgcggcggaacgaacagaatggtgcagctgcc
catgtcatcgcagaagatgtgaaacttctccagttccatgtggccaccatggtggacaac
gaactgcccggcttaccccgtgccatgcagaagtctggccgtcccctcaagtccctgaag
caacggttgaagggcaaggaaggacgggttcgagggaatctaatgggcaagcgagtggac
ttctcagcccgcactgtcatcacccctgaccctaacctatccattgaccaagttggtgtg
ccccgctccattgctgccaacatgacctttgcagagattgtcacacctttcaacattgac
agacttcaggaattagtacgcaggggaaacagccagtatccaggagccaagtacatcatc
cgagacaacggtgatcgaattgacttacggttccatcctaagcccagtgaccttcaccta
cagactggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaatcgt
cagccaactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
acatttcgcttgaatcttagtgtgacaactccatacaatgcagactttgatggagatgag
atgaatttgcacctgcctcagtctctggagacacgggcagagatccaagagttggccatg
gtacctcgaatgattgtcactccccagagcaatcgacctgtcatgggtattgtgcaagac
acactcacagcggtccgcaaattcactaagagagatgtcttcctggagcggggtgaagtg
atgaacctcttaatgttcctgtccacgtgggatgggaaggtcccacagccagccatcctc
aagccccggcccctgtggacaggcaagcaaatcttctccctcatcatacctggtcacatc
aattgtatccgtactcacagcacccatcctgatgatgaagatagtggcccttacaagcac
atctctcctggggacaccaaagtggtggtggagaatggggagcttatcatgggcatcctt
tgtaagaagtctctgggcacatcagcaggctctctggtccacatctcctacttagagatg
ggtcatgacgttacccgcctcttctactccaacattcagactgtcattaacaactggctt
ctcatcgagggtcataccattggcattggggactccattgcagattccaagacttaccag
gacattcagaacactattaagaaagctaaacaggatgtaatagaggtcattgagaaggct
cataacaatgagctagaacccaccccaggaaacacattgcgccagacatttgagaatcaa
gtgaatcgcattctcaatgatgctcgagacaaaactggctcctctgcacagaaatccctc
tctgaatataacaacttcaagtctatggtggtgtctggagctaaagggtccaagatcaac
atctcccaggtcattgccgttgtcgggcagcagaacgtggagggcaagcggatcccattt
ggatttaagcatcggactcttcctcactttatcaaggatgattatggtcccgagagccga
ggctttgtagaaaactcctacttggctggcctcactcccactgagttcttcttccatgcc
atgggaggacgagaaggtctcattgacacagctgttaagactgctgagactgggtatatt
cagcgaaggctgataaaatccatggagtcggtgatggtgaaatatgatgcaactgtgagg
aactccatcaaccaggtggtacagctacgctatggagaggacggcctagcaggcgagagc
gttgagttccagaatctggctacacttaagccttctaataaagcttttgagaagaagttc
cgttttgattataccaatgagagggccctgcggcggactcttcaggaggatctggtaaag
gatgtgctgagcaatgcccacatacagaatgagctagaacgggaatttgaacggatgcgg
gaagatcgggaagtgctcagggtcatcttcccaactggtgacagcaaggtggtcctccct
tgtaaccttctgcggatgatctggaatgcacagaaaatcttccatatcaaccctcgcctt
ccctctgacctgcaccccatcaaagtggtagagggagtcaaagaattgagcaagaagttg
gtaattgtgaatggagatgacccactaagtcggcaggcacaggagaatgccactttgctc
ttcaacatccacctaagatccacactttgctctcgccgaatggctgaggagtttcggctc
agtggagaggcctttgactggctgctcggggagatagagtccaagttcaaccaagccatt
gcccatcctggagaaatggtgggagctttggctgctcagtctcttggagaacctgccact
cagatgaccctgaacactttccactatgctggtgtatctgccaagaatgtgacgctgggt
gtacctcggcttaaggagctcatcaacatctctaagaagccaaagaccccttcactcact
gtcttcctgttaggccaatctgcccgagacgctgagcgggccaaggacattctttgccgc
ttggaacatacaacattgaggaaggtgactgccaacacagccatctactatgaccccaac
cctcagagcacagtggtggcagaagatcaggagtgggtgaatgtgtactatgagatgcct
gactttgatgtagcccgaatatccccctggctgctgcgtgtggaactggaccgaaagcac
atgactgaccggaagcttaccatggaacagattgctgaaaaaatcaatgcaggctttggc
gatgatttgaattgtatcttcaatgatgataatgcagagaagctggtccttcgtatccgc
atcatgaacagtgatgaaaacaagatgcaggaggaggaagaggtggtggataagatggat
gatgatgttttcctgcggtgcattgagtccaacatgctgacagatatgaccctgcagggt
attgagcagatcagcaaggtatacatgcacttacctcagacagacaacaagaagaagatc
atcatcacagaagatggggagttcaaggccctgcaagaatggatcttggagacagatggt
gtgagcctgatgcgggtgctgagcgagaaggatgtagaccctgtgcgcactacgtccaat
gacatcgtggagatcttcacggtactgggcattgaggctgtgcggaaggccctggagcga
gaactgtaccatgtcatctcctttgatggttcctacgtcaattatcggcatttggctctt
ctgtgtgacacaatgacatgccgtggccacttgatggccatcactcgtcatggagtcaac
cgccaggacactggaccactcatgaaatgctcctttgaggaaacggtggatgtccttatg
gaagcagctgcacatggggagagtgaccccatgaagggagtctctgagaatattatgctg
ggccagctcgctccagctggtactggctgttttgacctcctgcttgatgctgagaaatgc
aaatacggcatggaaatccccaccaatatccccggactgggggccgctggacctactggc
atgttctttggctctgcacccagtccgatgggaggaatctctcctgcaatgacaccctgg
aaccagggtgcaactccagcctatggtgcctggtccccaagtgttgggagtgggatgacc
ccaggagcagctggcttctctcccagtgctgcatctgatgccagtggcttcagcccaggt
tactcgcctgcatggtctcccacaccaggctctccaggctcccctggaccctcaagccca
tatatcccctcaccaggtggtgctatgtctcccagctactcaccaacatcaccagcatat
gagccgcgctcccctgggggctatacaccgcagagcccctcatactcccctacttctcct
tcctactccccaacgtctccgtcttattctccaaccagtcccaactatagtcctacctca
cctagctactccccaacctctcctagctattccccaacctctccatcctactcaccaacc
tctccatcctactcaccaacctctcccagctactccccaacctctcccagctactcccca
acatcacccagctattctccaacttctcccagctactcaccaacatctcctagctattcc
ccaacatctcccagctactcaccaacctctccaagctattctcccacctcccccagttac
tcaccgacatctccaagctactcaccaacttctccaagttactcaccaacttccccaagt
tactcacccactagccctaactattccccaactagtcccaactataccccaacctcaccc
agctacagcccaacctcacccagctactcacctactagtccaaactatacacctaccagc
cctaactacagcccaacctctccaagctattccccaacctcacccagttactctcccacc
tcacccagctactctccctcgagcccacggtatacacctcagtctccaacctacacaccg
agttcaccaagctacagccctagctcgccaagctacagccctacttcccccaagtatacc
ccaactagtccttcctacagtcctagctcaccagagtataccccaacttctcccaaatac
tcacctacaagccccaaatattcacccacttctcccaagtattctcctaccagccccact
tactcacccaccaccccaaaatactcgccaacctctcctacatattcaccaacctctcca
gtctacaccccgacctctcccaagtactcccctactagtcctacctactccccaacttct
cccaagtactcgcccaccagtcccacctactcacccacctctcccaagggctccacctac
tctcccacttctcctggctactcccccaccagccccacctacagcctcaccagtccagcc
atcagcccagaagacagcgatgaggagaactga
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integrated database retrieval system
