Rhodococcus opacus PD630: Pd630_LPD06004
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Entry
Pd630_LPD06004 CDS
T03071
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Pd630_LPD06004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD06004
Enzymes [BR:
roa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Pd630_LPD06004
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Pd630_LPD06004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AHK33195
LinkDB
All DBs
Position
complement(6228373..6231633)
Genome browser
AA seq
1086 aa
AA seq
DB search
MLVLHRAERSTTLASALGDVLATPLPDPFAREVVAVPAKGVERWLTQRLSTALGARPDVG
DGVAANIDFPSPTRLVDECLAAATGVTADDDPWNPSRVLWSLLGVVDDCLGEPWCAVLAK
HLGHGLPDRDPDDHRPGRRYATASHLTDLFRSYAAQRPAMLVDWAGGRDTDGAGGPLDDD
LLWQAELWRRLRERIGSPAPAERLDSDCARLREEPDLVELPVRLSLFGPTRLATEQIAVL
AALAVNRDVHLWLPHPSPAMWSSLSAAGSVLARADDDTALSVAHPLLSSLARDVRELESR
LTRLDVDDLHHEGPPPRDSLLGCLQADVRDDRAPALAECTADASVQVHACHGPARQVEVL
RECLLHLFEDDPTLEPRDVLVMCPDVESYAPLIRAAFGQDVLGHPGHRLRVRLADRALHQ
TNPVLAVVSALLELADARVTASQVLDLSAAAPVRRRFRFGDDDLERIREWATATGARWGI
GPRQRAAFGLGEFPQNTFTTALDRILLGAAADESEGEWLALALPLDDVDSNDIDLTGRLA
EFVDRLDVALRGLGGPQSVADWSSALTRALDLLVDVSAADTWQLAQARRELGAAMEHGGD
AVLRLSDVRAMLATRLAGRPTRANFRTGELTVCTMVPMRSVPHRVVVLLGLDDEVFPRGV
SVDGDDVLARNPLLGERDPRSEDRQLLLDAVMSASEKLLLFYTGADPVTGMSRPPAIPLS
ELLDAVAATVGSDALPRIVTRHPLQPFDARNFRPGHPFSFDRAALAGARAAQHPPEPEPA
FLPAPLVPPPLGDVDLADLIAFLVHPTQAFLRQRLGLRVPDVDEDLADALDVAPDPLARW
DLGQRMLVARLAGVELADFRAAEWRRGTLPPFKLGESVLGGIEHAVESLVAVSGSVHVGR
AETVDVDVDLGSGRRLTGTVGGVHGSVIASTTYSKLGPKHRLAAWAQLLAVAASDNETEW
TAVTTGRGAYSRPAWRSTLTAPENAAEELVRLVELRDLGLHAPLPIATGASAAYAERRHG
GSSMEDAIEAARKEWSSDFGDSRDRHITYVYGSSPGIDVLGDTVTIENYARQLWAPLLAA
ETVAQP
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgtactgcatcgcgccgagcgttccaccactctcgcgtcggctctcggcgacgtg
ctcgcgaccccgctgcccgatccgttcgcccgggaggtcgtcgcggtcccggcgaagggg
gtggagcgctggctcacgcagcgactctcgaccgcgctcggtgcccgacccgatgtcggg
gacggggtggccgcgaacatcgacttcccgtccccgacccggctcgtcgacgaatgcctc
gccgccgccacgggggtaaccgccgacgacgacccgtggaatccgtcccgcgtgttgtgg
tcgttgctcggcgtcgtcgacgactgtctcggtgagccctggtgtgccgtcctcgcgaaa
cacctcgggcacggcctcccggaccgcgacccggacgatcaccggcccggccggcgctac
gccaccgcctcacacctgaccgatctgttccgcagttacgccgcacagcggccggcgatg
ctggtcgactgggccggaggtcgcgacaccgacggcgcgggtggtccactcgacgacgac
cttctctggcaggccgaactgtggcggcggctgcgtgagcggatcggcagccccgctccc
gccgagcggctcgactccgactgcgcccggctgcgcgaggaaccggacctcgtcgaactc
cccgtccgactgtcgctgttcggcccgacacggctcgcgaccgaacagatcgccgtcctc
gccgccctcgccgtcaatcgtgatgtgcacctgtggcttccgcatccgagtcccgcgatg
tggtcgtcgctgtccgcggcaggcagcgttctcgcacgcgccgacgacgacaccgcgctg
tccgtcgcccatccgctactgtcgagcctcgcgcgggacgtccgcgaactcgagtcgagg
ctgacccgcctcgacgtcgacgacctccaccacgaggggcctccgccgcgcgactccctg
ctggggtgcctgcaggcggacgtccgggacgaccgggcgcccgcgctcgccgagtgcacg
gccgacgcgtccgtccaggtgcacgcgtgccacggaccggcccgccaggtggaggtcctg
cgtgaatgcctcctgcatctcttcgaggacgatccgactctcgaaccgcgcgacgtgctc
gtcatgtgccccgacgtcgagtcgtacgccccgctgatccgggccgcgttcgggcaggac
gtgctcgggcatcccggccatcggcttcgggtccggctcgcggatcgtgccctgcaccag
accaatccggttctcgccgtggtgtcggctctcctcgaactcgccgacgcgagggtgacg
gcgagtcaggtcctggacctgtcggcggccgcgccggtgcgtaggcggttccggttcggc
gacgacgacctcgaacggatccgggagtgggcgaccgcgacgggcgcccgctggggaatc
gggccgcggcagcgcgccgcattcggtctcggcgaattcccccagaacacgttcaccacc
gcgctcgaccgcatcctgctcggcgccgcggccgacgagtccgaaggcgaatggctcgcc
ctggcgctgccgctcgacgacgtcgacagcaacgacatcgacctcaccgggcggctggcc
gaattcgtcgaccggctcgacgtcgcgctgcgcgggctcggcgggccgcaatcggtcgcc
gactggtcgagcgcgctcacccgggcgctcgacctcctcgtcgacgtcagcgccgccgac
acgtggcaactcgcgcaggcgcgacgagagctcggggcggcgatggaacacggcggcgac
gcggtcctgcgcctgtcggacgtgcgcgccatgctggccacccggctcgcgggccgtccc
acccgcgcgaacttccgcacgggcgagctgacggtgtgcacgatggtgccgatgcggtcg
gtgccgcaccgtgtggtcgttctcctcggcctcgacgacgaggtcttcccgcggggcgtg
agcgtggacggcgacgacgtgctggcccgtaatccccttctcggtgaacgtgacccgcgc
agcgaggaccggcagttgctgctcgatgccgtgatgtcggcgagtgagaaactcctgctg
ttctacacgggcgccgaccccgtcaccggcatgtcccggccgccggcgatcccgctgtcc
gagctgctcgacgcggtggcggccaccgtcgggagcgatgccctgccccgaatcgtgacc
cggcatccgttgcagccgttcgatgcacgcaacttccggcccgggcacccgttcagtttc
gaccgggcggcgctggccggtgcccgcgccgcgcagcacccgcccgaaccggagcccgcg
ttcctgcctgcgccattggtgccgccgccgctgggggacgtcgatctcgccgacctcatc
gcgttcctggtgcacccgacgcaggcgtttctgcggcaacggctcgggttgcgggtcccc
gacgtggacgaggacctcgccgacgcattggacgtggcgcccgatccgctggcccggtgg
gatctcggccagaggatgctcgtcgcgaggctggcgggagtcgaactggccgacttccgc
gccgcggagtggcgccgagggacgttgccaccgttcaagttgggggagtcggtgctgggg
ggtatcgagcacgcggtcgagtcgctcgtcgccgtcagcgggtccgtgcacgtcgggcgc
gcggagaccgtggacgtcgatgtcgatctcggctccggacggcgcctcaccggcaccgtc
ggcggtgtgcacgggtcggtgatcgcgagcaccacgtactcgaagttggggccgaaacac
cgtctcgccgcctgggcgcagttgctggcggtcgcggcgtccgacaacgagaccgagtgg
actgccgtcacgaccggccgcggcgcgtacagccgtccggcgtggcggtcgaccctcacc
gcacccgagaacgcagcggaggagttggtgcgactcgtcgaactgcgcgatctggggctg
cacgcgccgttgccgatcgccacgggcgcgtcggcggcctatgccgaacgacgccacggc
ggcagcagcatggaggacgcgatcgaggcggcccggaaggaatggagcagtgacttcggt
gactcacgcgaccggcacatcacgtacgtgtacgggtcctcaccaggaatcgacgtcctc
ggcgacacggtgaccatcgagaactacgcccggcaactgtgggcgccgctgctcgccgcc
gagacggtggcgcagccgtga
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