KEGG   Rhodopseudomonas palustris BisB18: RPC_3685Help
Entry
RPC_3685          CDS       T00336                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpc  Rhodopseudomonas palustris BisB18
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpc00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    RPC_3685
Enzymes [BR:rpc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RPC_3685
DNA repair and recombination proteins [BR:rpc03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RPC_3685
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(4108118..4110880)
Genome map
AA seq 920 aa AA seqDB search
MARSHRGFPVTLDNLKLYRKKRDFEKTAEPSGEAKVAPSQRRRFVIQKHDATRLHYDLRL
EFDGVFKSWAVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGYW
EADDPERGFKTGDLKFTLHGEKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDDDAREGDAN
DILAQEASVASGRAMEEIAAGKGRAPKPFMVKAARAKADAVWDSNRGLAAEARGEREAPA
KRRAASRPAKQAKAKQAKAKPAKRAKAKAVAAMPDFIAPQLCSSVERPPGGAGWGHEIKF
DGYRVQLRVEGGQATLKTRKGLDWTRKFRAIADQAAALPDAIIDTEIVALDAAGAPDFAA
LQAALSDENTDNLICFAFDLLFAEGEDLRALPLSERKQRLQEMLEQARGRRKQSVIRYVE
HFESGGDAILQSACKMSLEGIVSKKLDAPYRSGRSESWTKAKCRAGHEVVIGGWKSNAGK
FRSLMVGVHRDDHLAYVGIVGTGFGQVMVKRIMPALKANASNENPFGGKTAPKKTAEVHW
LKPELVAEIEFAGFTGAGMVRQAAFKGLRQDKPAEEVEAETPKKTAVAEPGRGKRGGKAK
AGAAKPAASKPAAAKPGHPAQVMGVLISKPDKQLWPDASDGEPVTKLDLARYFEAVGDWM
LPHIKGRPCSIVRAPDGIKGEQFFQRHAMPGTSNLLELVSVSGDRKPYLQVDRVEGLAAV
AQIGGLELHAWNCAPDAPDVPGRFVFDLDPAPDVAFSDVVAAAREMRERLTALGLESFCK
TTGGKGLHVVTPLSKSKDNVDWKQAKAFAQAVCRQMAEDSPERYLLNMSKKLREGKIFLD
YLRNDRMATAVAVLSPRARDGATVSMPLTWPQVKGDLDPKRFTLRTVPGLLAKSKAWAGY
DEAATPLKAAIKRLASSGTT
NT seq 2763 nt NT seq  +upstreamnt  +downstreamnt
atggctcgctcgcacagaggatttcccgtgacgctcgacaacctcaagctctatcgcaag
aagcgcgacttcgagaagaccgcggagccgagcggcgaagcgaaagttgcgccgtcgcag
cgtcgccgcttcgtgatccagaaacacgatgccacaaggctgcactacgatctgcggctg
gaattcgacggcgtgttcaagtcgtgggcggtgacgcgcgggccgtcgctcgatccgcac
gacaagcggctcgcggtcgaggtcgaggaccatccgctcgactacggcgatttcgaaggc
accattccggagggccagtatggcggcggtacggtgcaattgtgggatcgcggttactgg
gaggccgacgatccagagcgcggcttcaagaccggcgacctcaaattcacgctgcacggc
gagaagctgcacggctcctgggtcttggtgcggatgcgcaacgatcgcagcggcggcaag
cgtaccaactggctgctgatcaagcaccgcgacgacgacgcccgcgaaggcgacgccaac
gacatcctcgcacaggaagcctcggtggcgtcgggccgcgcgatggaggagatcgctgcc
ggcaagggccgcgcgccgaagccgttcatggtgaaagccgcgcgggccaaggccgacgcg
gtgtgggattccaatcgcgggcttgcggccgaggcacgcggcgagcgtgaagcgccagcc
aagcgccgcgcggcgtcaagaccggcgaaacaggccaaggcgaaacaggccaaggcaaaa
cccgccaagcgcgccaaggcaaaggccgtcgccgcgatgccggacttcatcgcgccgcag
ctctgcagctcggtggagcgaccgcccggcggcgcgggctggggccacgagatcaagttc
gacggctaccgcgtgcaattgcgcgtcgaaggcggccaggccacgctgaagacccgcaag
gggctggactggacgcggaaattccgggccatcgccgaccaggccgcggcgctgccggat
gccatcatcgacaccgagatcgtcgcgctcgacgccgccggcgcgccggatttcgccgcc
ttgcaggccgcattgtcggacgagaacaccgacaatctgatctgctttgcgttcgatctg
ttgttcgccgagggcgaggatctgcgcgccttgccgctcagcgagcgcaagcagcggctt
caggagatgctcgagcaggcgcgcggccgccgtaagcagagcgtgatccgctatgtcgag
cacttcgaaagcggcggcgacgcgatcctgcaatcggcctgcaagatgtcgctggaaggc
atcgtctccaagaagctcgacgcgccgtatcgctccggccgcagcgagagctggaccaag
gcgaagtgccgcgccggccacgaggtggtgatcggcggctggaagagcaacgccggcaaa
ttccgctcgctcatggtcggtgtccatcgcgacgatcatctggcctatgtcggcatcgtc
ggcaccggctttggtcaggtcatggtgaagcgcatcatgccggcgctgaaggcgaacgcc
tcgaacgagaatccgttcggcggcaagaccgcgccgaagaagaccgcagaggtgcattgg
ctgaagccggagctggtggcggagatcgaattcgccggcttcaccggcgccggcatggtg
cgccaggcggcgttcaagggcctgcgccaggacaagccggccgaggaggtcgaggcggaa
acgccgaagaaaaccgcggtggccgaaccgggccgcggcaagcgcggcggcaaagccaag
gcgggcgcggcaaagccagccgcgtcgaagcccgccgcggcgaagcccggccatcccgcg
caggtgatgggcgtgctgatctccaagcccgacaagcaattgtggcccgacgccagcgat
ggtgagccggtgaccaagctcgatctggcgcgctacttcgaggcggtcggcgattggatg
ctgccgcacatcaagggccggccgtgctcgatcgtgcgggcgccggacggcatcaaaggc
gaacagttcttccagcgccacgccatgcccggcacctcgaacctgctggagctggtctcg
gtctcgggcgaccgcaagccgtatctgcaggtcgaccgcgtcgagggcctcgccgcggtg
gcgcagatcggcgggctggagctacacgcctggaattgcgcgccggatgcccccgacgtc
cccggccgtttcgtgttcgacctcgatccggcgcctgacgtggcgttttccgacgtggtg
gccgcggcgcgcgagatgcgcgaacgcttgaccgcgttgggcctggagagtttctgcaag
accaccggcggcaaggggctgcatgtggtgacgccgctctcaaagtcgaaagacaatgtc
gactggaaacaggccaaggcgttcgcccaggcggtgtgccggcagatggccgaggatagc
cccgagcgctatttgctcaacatgtcgaagaagctgcgcgagggaaagatcttcctggac
tatctgcgcaacgaccgcatggcgaccgcggtggcggtgttgtcgccgcgggcgcgcgac
ggcgccacggtgtcgatgccgttgacttggccgcaggtgaagggcgatctcgatccgaag
cgattcacgttgcgcacggtgcccgggttgttggcgaaatccaaagcctgggcgggttac
gacgaagcggccaccccgctgaaggctgccatcaagcggctggcctccagcggaacgacg
tag

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