Ralstonia pickettii 12D: Rpic12D_0434
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Entry
Rpic12D_0434 CDS
T00925
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpic12D_0434
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpf03019
]
Rpic12D_0434
Enzymes [BR:
rpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rpic12D_0434
Messenger RNA biogenesis [BR:
rpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rpic12D_0434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ACS61740
UniProt:
C6BCM9
LinkDB
All DBs
Position
1:457335..459032
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AA seq
565 aa
AA seq
DB search
MSFSELGLSDKLVRAVAELGYAEPTPIQRQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL
HRLSASQPNKVQTPQGMRFPIRALVLTPTRELAAQVEESVRAYGKYLPLKSMVMFGGVGI
NPQIDALKRGVDIVVATPGRLLDHVGQRTIDLSHIELLVLDEADRMLDMGFIHDIRKILN
ILPPKRQNLLFSATFSDDIRELADRLLDKPALIEVARRNTTAETVEQRIYPVDRERKREL
LAKLVRDNDWHQVLVFTRTKHGANRLAEQLTRDGIPALAIHGNKSQSARTRALTEFKAGT
LRVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAQGEAISLVCVDEHG
LLRDIERLIKRELPRTVLEGFEPDPSIAAEPIPNGRNSAGRGGNARGGRPGGGRSQQPRQ
ASGNAAPREPRAPREPREPRRESSGNGQGQGQGQNQGQGQGQGQGRNGAGSRQRQPQGQR
DGQAAPKPRNGHGAGNGNGQSQARGQRQGNGQGQGQGNGQGGQGGQQRRASNTQAAQPAH
KAQPAKQPFNGLFAKAAALLGGRKA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttttccgaactcggcttgtcagacaagctggtacgtgccgtggccgaactcggc
tacgcagaacccactccgattcaacgccaggccatccccgccatcctcaagggcggtgac
ctgctcgccggtgcacagaccggcaccggcaagaccgccggtttcacgctgccgctgctg
caccgcctgtcggcatcgcagcccaacaaggtgcaaacgccgcagggcatgcgctttccg
atccgcgcgctggtgctgacgcccacgcgtgagcttgccgcgcaggtggaagaaagcgtg
cgcgcctatggcaaatacctgccgctgaagtcgatggtgatgttcggcggcgtcggcatc
aacccgcagatcgatgcgctcaagcgcggtgtcgatatcgtcgtggccacgccgggccgc
ctgctggaccacgtcggccagcgcaccatcgatctgtcccacattgaactgctggtgctg
gacgaagccgatcgcatgctggacatgggcttcatccacgacatccgcaagatcctcaac
atcctcccgccgaagcgacagaacctgctgttctcggcaacgttctccgacgacattcgc
gaactggccgatcgcctgctggacaagccggcgctgatcgaagtcgcgcgccgcaacacg
accgccgaaacagtcgaacaacgcatctacccggtcgaccgagagcgcaagcgcgaactg
ctggccaagctcgtgcgcgacaacgactggcaccaggtgctggtcttcacgcgcaccaag
cacggcgcgaaccgcctggccgagcagctcacgcgcgacggcattcccgcgctggccatc
cacggcaacaagagccaatcggcgcgcacgcgtgcgctgacggagttcaaggccgggacg
ctgcgggtgctggttgcaaccgacatcgctgcgcgcggtatcgacatcgaccaactgccg
cacgtggtcaacttcgacctgccgaacgtgccggaagactacgtgcaccgtatcggccgc
acaggccgcgccggcgcgcaaggcgaggcgatttcgctggtctgcgtggacgagcatggc
ttgctgcgcgacatcgagcgcctcatcaagcgcgaactgccgcgtaccgtgctggaaggt
ttcgagccggacccgtccatcgcggcggagccgattccgaacgggcgcaactcggcgggc
cgtggcggtaacgcgcgcggtggccgcccgggcggtgggcgcagccagcagccgcgccag
gccagcggcaacgctgcgccgcgcgagccgcgggctccgcgtgagcctcgtgagccgcgt
cgcgagtcgagcggtaacggtcagggtcagggtcagggtcagaaccaaggccaaggccaa
ggccaaggccaaggccgcaatggtgccggcagccgccagcgtcagccgcaaggtcaacgc
gacggccaggctgcgccgaagccgcgcaatggccacggtgccggcaacggcaacggccaa
tcgcaggcgcgcggccagcgccagggcaacggtcaaggccagggccaaggcaatggacaa
ggcgggcagggcggtcaacaacgccgcgcatcaaacacgcaagctgcgcagcccgcccat
aaggcacagccggccaagcagccgttcaatggtttgttcgccaaggcggctgcgttgctc
ggcggccgtaaagcctga
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