Raoultella planticola: B1209_04770
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Entry
B1209_04770 CDS
T05298
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
rpln
Raoultella planticola
Pathway
rpln03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
B1209_04770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpln03400
]
B1209_04770
Enzymes [BR:
rpln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
B1209_04770
DNA repair and recombination proteins [BR:
rpln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
B1209_04770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AUV52244
LinkDB
All DBs
Position
964955..968503
Genome browser
AA seq
1182 aa
AA seq
DB search
MTETAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGESAFPRAVSVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRDSATDPLYSALLAEIADKNQAANTLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESRLRYQACADFWRRHCYPLPREIA
AVIHEAWKGPRDLLKSLDRWLQGEAPQLKSPPAAEETLAERHQHIIARINAMKTQWREQV
AEIEGVLENSGLDRRKFNRGNQGKWIEKINAWAQEETLGYQLPDALEKFSQAFLHERTKA
GGEPPVHPLFSAVEELLSSPLTLTDLVIARAMVEIREAVAREKRRRGELGFDDMLSRLDD
ALRGESGEALASAIRQRFPVAMIDEFQDTDPQQYRIFRRIWRQQPETALLLIGDPKQAIY
AFRGADIFTYMKARGDVAAHYTLDTNWRSAPGVVESVNRLFSLSDNPFMFREIPFLPVKP
AGKNHGLRFTVDNDAVPAMNIWLMPGEAVGSGDYQTYMAQLCAAQIRDWLSAGQQGRALL
WRNDKAARPVQASDITVLVRNRQEASLIRDALRALAIPSVYLSNRDSVFDTPEAQEILWL
LQAVLAPERENTLRSALATSIFGLNALDIERLNQDERAWDALVEEFSIYRQIWRQRGVMP
MLRALMSARQIAENLLVTVGGERRLTDILHISELLQEAASQLESEHALVRWLTQHIAEPD
SNASSQQMRLESDKHLVQIVTVHKSKGLEYPLVWLPFIARFRKQDQAFYHDRDSFAAVLD
LGQDEGSLELAEAERLAEDLRLLYVALTRAVWHCSLGVAPLSTRRSDKPGASDFHHSALG
RLLQGGEAMDAAGLAARLQAFCGEDIALQMPTAPDATPWQAPQETLPPLSARSLVRQVSD
DWRVTSYSGLQQHGQSAAQDLLPRLDVDAAGVGDVAAEPQLTPHQFPRGASPGTFLHSLF
EDLDFTQPVPADWMAEKLQSGGFGEQWTPVLTQWLDDVLRTPLPGAGIALNQLSTNDKQV
EMAFYLPIERPLEPLRLDELIRRYDPLSVDCPPLDFRQVRGMLKGFIDLVFRHNGRYYLL
DYKSNWLGADREAYTRQAMEQAMRAHRYDLQYQLYSLALHRYLRHRIADYDYERHFGGVI
YLFLRGMDGQSGEQGIFTTRPVQPLIDGLDAMFAGDVLEVLS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaaaccgccgagtctctggatcccctgcgcttgcccttgacgggtgagcgcctg
attgaagcctctgcgggcaccggaaaaacctttaccatcgccgcactgtacctgcggcta
ctgctggggcttggcggggaatccgcctttcctcgtgcagtcagcgtggaagagctgctg
gtggtgaccttcaccgaagcggccaccgaagaactgcgcggccgtattcgcagcaatatc
cacgagctgcgcattgcctgcctgcgcgacagcgcgaccgatcccctctatagcgctttg
ctggctgaaattgcggataagaaccaggcggcgaatacgctgctgctggcggaacgacag
atggacgaagcggcggtatttaccattcacggcttttgtcagcggatgctgagtctcaat
gcctttgagtccggcatgctctttgagcagcagctgatcgaagatgaatcccggctgcgt
taccaggcctgcgcagacttctggcgtcgacattgctatccgttgccgcgggagatcgcc
gccgtcattcatgaggcgtggaaaggtccgcgcgatctgttgaaatccctcgatcgctgg
ttgcagggcgaagctccgcagctcaaatccccgccggcagcggaagagacgctggccgaa
cgccatcagcacattattgcgcgcattaacgccatgaaaacacagtggcgggaacaggtt
gctgagattgagggggtactggagaactccggtctcgaccgccgcaagttcaatcgcggc
aaccagggaaagtggatagagaaaatcaacgcctgggcgcaggaagagacgctcggttat
cagcttcctgacgcgctggagaaattctcgcaggccttcttacatgaacgaactaaagcc
ggcggtgagccgccggtgcatccgctgttcagtgcggttgaagagctgctctcttctccg
ctgacgctgacggatctggttatcgccagggcgatggtggagatccgcgaagcggtcgcc
cgggaaaagcgtcggcgcggcgagctcggttttgatgacatgctcagtcggctggatgat
gcgctgcgcggcgagagcggagaagcgctggccagcgccattcgtcagcgtttcccggtg
gcgatgattgatgaatttcaggacaccgacccgcagcagtaccgaattttccgccgtatc
tggcggcagcagccggagacggcgctgctgcttatcggcgaccccaagcaggccatctat
gccttccgcggcgcggatattttcacctatatgaaagcgcgtggcgatgtggcggctcat
tatacgctggataccaactggcgctctgctcccggggtggttgaaagcgttaaccgcctg
ttcagcctgagcgataacccctttatgttccgggagatccctttcttgccggtcaaaccg
gccgggaaaaaccacgggctgcgctttaccgtggataacgacgcggttccggcaatgaac
atctggctgatgccgggcgaggccgtgggatccggtgactatcagacgtatatggcgcag
ctgtgcgcggcgcaaattcgcgactggctaagcgccggtcaacaggggcgcgcgttgctc
tggcgtaatgacaaagcagcccggccggttcaggcctccgatatcacggttctggtacgt
aaccgtcaggaagcctcgttgatccgggatgccttacgggcgctggcgatcccgtcggtg
tatctctctaatcgcgatagcgttttcgacacgccggaagcgcaggagattttatggcta
ctgcaggcggtactggctcccgaacgagaaaatacgctacgcagtgcgctggcaacatcg
atattcggcttgaatgcgctggatattgaacgcctcaatcaggatgaacgagcgtgggac
gcgctggttgaagagttcagcatctaccggcaaatctggcgccagcgcggggtgatgccg
atgctgcgtgcgctgatgagcgcgcggcagattgcggaaaatctgctggtgacggtcggc
ggtgaacgccgtttaaccgacatcctgcatatcagcgaactgctgcaggaggcagccagc
cagctggaaagcgaacatgcgctggtgcgctggctgacgcagcatatcgccgaaccggac
agcaatgcgtccagtcagcagatgcgcctggaaagcgataagcacctcgtgcaaatcgtc
accgtccacaaatcgaaggggctggaatacccgctggtctggctgccgtttattgctcgt
ttccgcaaacaggatcaggcgttttatcacgatcgcgactcgtttgccgcggtgctcgat
cttggtcaggatgagggcagtctggagctggcggaagcggagcgcctggcggaagatttg
cgcctgctgtacgtcgcgctgacccgcgcggtctggcactgtagcctcggcgtggccccg
ttgagtacccgacgcagcgataaacccggcgccagcgattttcatcacagcgcgctcggg
cgtctgctacagggcggcgaagccatggatgccgctgggctggccgcgcgtttgcaagcc
ttctgcggcgaggatatcgcgctgcaaatgcctaccgctccggatgcaacgccctggcag
gcgccgcaggaaacgctgccgccgctgtccgccaggagccttgtgcgtcaggttagcgat
gactggcgggtgaccagctattccggattacagcagcatggtcagagcgcggctcaggat
ctgttgccgcgccttgacgttgatgccgccggcgtcggtgacgtcgccgcggagccgcag
cttacgccacatcagtttccgcgcggcgcatcgccggggacattcctgcatagcctgttt
gaagatctcgattttacccaaccggtcccggctgactggatggcggaaaagctgcagtcc
ggcggcttcggcgagcagtggacgccggtgctgacgcagtggctggatgatgtgctacgt
actccgttgccgggggccgggatcgcgctgaaccaactttccacgaatgataagcaggtc
gaaatggccttctatttgcctatcgaacgcccgctggaaccgctgcgtctggatgagctg
attcgccgctacgatccgctctccgtggattgcccgcccctcgacttccgccaggttcgc
gggatgttaaaaggctttattgacctcgttttccgccataacggccgatattacctgctg
gattataaatcgaactggctgggagcggaccgcgaggcctatacccgacaggcgatggaa
caggcgatgcgggcgcaccgctacgatctgcagtaccagctctatagtctggcgctgcac
cgctacctgcgtcaccgcattgcggactacgactacgaacgccattttggcggcgtgatt
tatctctttttacgcggcatggacgggcagagcggcgagcagggcattttcactacccgt
cccgtgcagccgctgattgacggtctcgatgcgatgtttgccggagacgtcctggaggtt
ctgtcatga
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