Rhodopseudomonas palustris TIE-1: Rpal_2002
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Entry
Rpal_2002 CDS
T00722
Name
(GenBank) phage SPO1 DNA polymerase-related protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rpt
Rhodopseudomonas palustris TIE-1
Pathway
rpt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rpal_2002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpt03400
]
Rpal_2002
Enzymes [BR:
rpt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Rpal_2002
DNA repair and recombination proteins [BR:
rpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rpal_2002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
STI1-HOP_DP
Motif
Other DBs
NCBI-ProteinID:
ACF00525
UniProt:
B3QAI8
LinkDB
All DBs
Position
complement(2166398..2167885)
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AA seq
495 aa
AA seq
DB search
MNRIRLDSDTDFDGWRKAARELVLADVAPADVTWTVAGDEPELFDAPGRAPDAGSFAETA
APFIHPAQSPSPAQTFNVPARFVELAHIAILHRDPQRFAYLYQLLWRLRANPELMQVATD
PDVARPQAMAKAVRRDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVELAAPFFARRFA
DMEWSILTPDVCAHWDGHAIAITPGVSKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQ
AEMPKKYWRNLPEAALIKPLIEHAERKAHAMVAAEATAPRKPQRQEPPMTRAEPKADTLA
HLREEAKDCRACDLWKDATQTVFGEGPQHATVMLVGEQPGDKEDLAGKPFVGPAGQMLDR
ALAEAGVDRSKTYVTNAVKHFKFVPRGKIRLHQKPATPEIKACRQWYERELAAVQPLLVV
AMGATAAQSVLGRITPINKTRGRLIDRDDGPQVLVTVHPSYLLRLPDADAKAREYARFVE
DLKLIAAHLKKAHAA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcatccggctcgacagcgacaccgacttcgacggctggcgcaaggcggcgcgg
gagctggtgctggcggacgtggcaccggcggatgtgacctggacggtggcgggcgacgag
ccggagctgttcgacgcgccagggcgggcgccggatgctgggtcctttgctgaaacggcc
gcgccgttcattcatcctgcacaatccccctcccccgcgcagaccttcaacgtccctgcc
cgcttcgtcgagctggcgcacattgccatcctgcatcgcgatccgcagcgctttgcgtac
ctgtatcagctgctgtggcggctccgcgccaatcccgagctgatgcaggtggcaaccgat
ccggacgtggcacggccacaggcaatggccaaggcggtaaggcgcgacgaacacaagatg
cacgccttcgttcgcttccgcgagatcggccgcgagccgaagtcgcgttacgtcgcctgg
ttcgagcccgagcatcatatcgtcgagctcgccgcgcctttcttcgcacggcgcttcgcc
gatatggaatggtcgatcctgacacccgacgtctgcgcacattgggacggccacgcgatc
gcaatcacgcccggcgtcagcaaggcaatggcgccgtcggaggatcggctggaggaaacc
tggctgacttactacgccagtatcttcaatccggcgcggctgaagaccaaggcgatgcag
gccgaaatgccgaagaaatattggcgcaatctgcccgaagcggcgctgatcaaaccgctg
atcgaacacgccgagcgcaaggcgcatgcgatggtcgcggccgaggcgaccgcgccgagg
aaaccgcagcgacaggagccgccgatgacgagagccgagccgaaggccgacacgctggcg
catctgcgcgaggaagcgaaagattgccgcgcctgcgacctgtggaaggacgccacccag
accgtgttcggcgaaggcccgcagcacgccaccgtgatgctggtcggcgagcagcccggc
gacaaggaagacctcgccggcaagccgttcgtcggccccgccggccagatgctcgaccgc
gcactggcggaggccggcgtcgaccgcagcaagacctacgtcaccaacgcggtgaagcac
ttcaaattcgtgccgcgtggcaagatccgcctgcaccagaagccggccacgccggagatt
aaggcttgccggcagtggtacgagcgcgagctcgccgcggtgcagccgctgctggtggtg
gcgatgggcgccaccgcggcgcagagcgtgctcggcaggatcacccccatcaacaaaacc
cgcggccgcctgatcgaccgcgacgacggtccgcaagtgctggtcaccgtccacccgtcc
tacttgctgcggctgcccgacgccgacgccaaggcgcgcgaatacgctcgcttcgtcgaa
gatctgaagctcatcgccgcacatctgaagaaggcgcatgcggcgtag
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