Rhodopseudomonas palustris TIE-1: Rpal_2022
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Entry
Rpal_2022 CDS
T00722
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
rpt
Rhodopseudomonas palustris TIE-1
Brite
KEGG Orthology (KO) [BR:
rpt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpt03021
]
Rpal_2022
Transcription machinery [BR:
rpt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Rpal_2022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
DUF134
GerE
HTH_10
HTH_23
HTH_Tnp_ISL3
HTH_17
Phage_antitermQ
TrmB
DUF2089
Motif
Other DBs
NCBI-ProteinID:
ACF00545
UniProt:
B3QAK8
LinkDB
All DBs
Position
2194307..2194876
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AA seq
189 aa
AA seq
DB search
MSTKQAATDDVLIARIAQGDRVAMQVLYGRHHVKVFRFGLRLVRNEQIAEDLISEVFLDV
WRQAGKFEGRSSVSTWLLAITRFKALSALRRRKDAELDDEAAAAIEDPSDDPEIAVQKKD
TGEALRKCLTSLTPEHREIVDLVYYHEKSIEEVAEIVGIPENTVKTRLFYARKKLADLLQ
AAGVQRGWP
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccaagcaggcagccaccgacgacgtcctgatcgccaggatcgcccagggggac
cgggtcgcgatgcaggtcctgtatggacggcatcacgtcaaagtcttccggttcggactg
cgcctcgttcggaacgaacagatcgccgaggatcttatcagcgaagtcttcctcgacgtc
tggcgtcaggccggcaagttcgagggacggtcttcggtttcaacctggctgctggcgatt
acgcggttcaaggcgctatcggcgctgcgacggcgtaaggacgccgaactggacgacgag
gccgccgctgcgatcgaggatccttccgacgatccggagatcgcggtgcagaagaaggac
acaggcgaagctctgcggaagtgcctgacctcactgacgcccgagcatcgagagatcgtc
gatctggtgtactaccatgagaaatccatcgaagaagtcgccgagatcgtcggaattccg
gagaacacggtgaaaacccgactgttctacgcacgcaagaaactcgccgatctgctgcag
gcggccggcgtgcagcgaggctggccatga
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