Rickettsia rhipicephali: MCC_00410
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Entry
MCC_00410 CDS
T01786
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rre
Rickettsia rhipicephali
Brite
KEGG Orthology (KO) [BR:
rre00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MCC_00410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rre03021
]
MCC_00410
Transcription machinery [BR:
rre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MCC_00410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nrap_D6
Motif
Other DBs
NCBI-ProteinID:
AFC71777
UniProt:
A0AA85YV29
LinkDB
All DBs
Position
60655..62556
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AA seq
633 aa
AA seq
DB search
MSNSNIDNDLDKIDSLLKKAKSKKIPVTYDDINNALPLNKNPSIRQLEEAILKFSDAGVD
ILESNEDDEIKLDIGMDEEFKLSTNVDNEPEDEVEENIGTTDDPVRLYLKDMGGVDLLTR
ENEVEIAKRIEEGHKTMTASLCRSPIAMRCFIVWYEDLVNEKMLLRDLIDLEANILHDET
PENDEEHSSETEGEEHEDNHLSISRVETQILPNIIERMKKISFICEELLIEAKKCYEKSF
EPKVLQNSKKYNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKYG
VTRQNFLDEYIGSVINAAWKEKMLKNKKGAWKELMTKESDYIDQMIAELSVIESKTGLLV
NDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELG
YEPTAMEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDA
AIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKA
LRKLQHPIRSKKLNSFRSGGKRGDGNPSDLLEA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagcaatatagacaatgatctagataaaatagatagtttacttaaaaaagct
aaatctaaaaagataccggtcacttatgatgatataaacaacgctcttcctcttaataaa
aatccttcaataagacaattagaggaagctatattaaaattttccgatgcgggagtagat
attttagaatctaatgaagatgatgaaattaagcttgatatcggaatggatgaagaattt
aagctatctaccaatgttgataatgaacctgaggatgaggtagaagaaaatataggtact
accgatgatcctgtaagattatatcttaaggatatggggggagtcgatcttttaactcgt
gaaaatgaagtagaaatagcaaaaaggattgaggaaggacataaaacaatgactgcttcc
ttatgcagaagccctattgctatgcgttgttttatagtatggtatgaagatttagttaat
gaaaaaatgttactacgtgatctgatagatttagaagctaacatattacatgacgaaaca
cccgaaaatgatgaagaacatagtagtgagaccgaaggagaagagcatgaggataaccac
ttatctatatctagagtagaaacgcagatattacctaatattatagagcgtatgaaaaag
atttcgtttatctgcgaagagctactcattgaagctaaaaaatgttatgagaaatctttt
gagccgaaggttttacaaaatagcaaaaaatataataatttggaattattaataaatgaa
gtttcggaaatacattttaattctaaaagaacggaagaaattttaggtaagatgtatgga
ataaatcgtgatttaattaataaagaaacagcctttttaaaacttgctgaaaaatatgga
gtaactcgccaaaatttccttgatgaatatataggatcggttatcaatgcagcatggaaa
gaaaaaatgctgaaaaataaaaaaggcgcttggaaagagttaatgactaaagaatcggat
tatatagatcaaatgattgccgaattatcggttatagaatctaaaaccggtcttttagtt
aatgattttaaaaaactagtgaatactatacaaaaaagtgagagacaaacgctacaagca
aaaaaagatatgatagaagcgaatttacgtttagttatatctatcgctaaaaaatacgct
aatagaggattgcagtttttagatttaattcaagaaggtaatataggacttatgaaagcg
gtggataaatttgaatatcgccgtggttataaattctctacctatgctacgtggtggatt
agacaagctataacaagagctattgccgatcaagcaaggactatacgtattcctgtgcat
atgattgaaacaattaataagatactacgtacttcaagacaaatgcttaatgaactcgga
tacgaaccaacagcaatggaaatcgctaaccgtctttcaatgccgcttgataaagtgcgt
aaagtcatgaaaatagctaaagaacctataagtcttgagaatcccgtaggtgatgatagt
gacggcggtcaattaggcgattttatcgaagataagaatgcagtagcaccgattgatgcg
gcaattcagtcaaatttacgagaagttaccactagagtacttgcaacccttacgcctcgt
gaagaaagagtgcttagaatgcgtttcggtataggtatgaatactgaccatacattagaa
gaagtagggcagcaatttaaagtaactagagaacgtataagacaaatcgagtcaaaagct
ttaagaaagttacaacatcctattagatccaaaaaacttaatagctttagaagcggagga
aagcgtggtgacggtaatccatcggatttactagaagcatga
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