Rhodococcus ruber: CS378_21645
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Entry
CS378_21645 CDS
T05142
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CS378_21645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_21645
Enzymes [BR:
rrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CS378_21645
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CS378_21645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ATQ31087
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All DBs
Position
4737244..4739505
Genome browser
AA seq
753 aa
AA seq
DB search
MTTRTFEGRRLNLTNLDKVLYPETGTTKADVVDYYVAVAPVMLPHVAGRPGTRKRWPEGV
GGESFFEKNVASHAPKWLTRKTVHHKQRSVTYPVFDSVAALAWLGQQAALELHVPQWRFA
GSVPGPATRIVFDLDPGEGVTLVQCAEVARLVRDMVGGLGWPAYPVTSGSKGIHLYVPLD
RELAPGGASAVAKQVAINLETLHPDLVTATMAKAARGGRVFLDWSQNNQAKTTIAPYSLR
GREQPWVAAPRTWDELDDPGLRQLRFDEVLARLDTAPDPLADLDPPRPEPDALTEYRGKR
DPSRTPEPVPAAVGSGPGNAFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPDDPGRNN
LAVRTEDHPLEYLTFHGVIPKGEYGAGSMTIWDTGSYETEKWRDDEVIVRLHGARVRGRY
ALIRTAGNQWLAHRMKDQGGQAGPPSGFPRDLEPMLATPGEVTGLDADEWAFEGKWDGYR
AVAEIENGQLRLHSRSGRDITGDYPALADLTRVLDGHDVVLDGEVVACDPGGVTSFPLLR
TGGTPQYFVFDVLYLDGVTLYRKPYADRRRVLDALAAATDGLIVPDVLRGNGSEALEEST
RRGWEGVVAKRRNSVYVPGRRSPDWVKSKNWLTQDVVIGGWRLGKGARAGTFGSLLVGVH
GEAGLEYVGRVGTGFDEPELADLSVALAGLRRRTTPFAGDVPREDARDAVWVTPKLVGEV
RFREWTDAGKLWHPSWRGLRDDIDPQDVKRPAQ
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgacccgcacgttcgaaggccgtcgtctgaacctgacgaacctcgacaaggtgctc
tacccggagacgggcaccacgaaggccgacgtggtcgactactacgtggccgtggccccg
gtgatgctgccgcacgtcgcgggccggcccggcacccgcaagcgctggcccgaaggtgtc
ggcggcgagtcgttcttcgagaagaacgtcgcctcccacgcgccgaagtggctcacccgt
aagacggttcaccacaagcagcgttcggtcacctatccggtcttcgactccgtcgcggcg
ctggcctggctcgggcagcaggcggcactcgaattgcacgtgccgcagtggcggttcgcg
ggttccgttccgggccctgcgacgcggatcgtgttcgacctcgaccccggggagggggtc
accctggtccagtgcgccgaggtggcccggctggtgcgcgacatggtcggcgggctgggc
tggccggcctacccggtcaccagcggcagcaaggggatacacctgtatgttccgctcgac
cgcgaactcgccccgggtggggcgtcggccgtggcgaagcaggtggcgatcaacctcgag
actctgcatccggacctggtcaccgcgacgatggccaaggccgcacgcggcgggcgggtg
ttcctcgactggagccagaacaaccaggccaagacgaccatcgccccgtattccctgcgc
ggccgcgagcaaccgtgggtcgccgcgccccgcacctgggacgaactcgacgatcccggg
ctgcgccagttgcggttcgacgaggtgctcgcgcgactggacaccgctcccgacccgctc
gccgacctcgacccgccgcggcccgagcccgacgccctgaccgagtaccggggcaaacgc
gacccgtcccgcacgcccgaacccgttcccgccgccgtgggttccgggccgggcaacgcc
ttcgtcatccaggaacaccatgcccgccggctgcactacgacctgaggctcgaacgcgac
ggggtgctcgcgtcgtgggcggtaccgaagaacctgccggacgacccgggccgcaacaac
ctcgcggtgcgcaccgaggatcatccgctcgagtacctcaccttccacggcgtcatcccc
aagggggagtacggcgccggcagcatgacgatctgggacaccggcagctacgagaccgag
aagtggcgcgacgacgaggtgatcgtgcgcctgcacggcgcgcgggtgcggggccggtac
gcgctgatccgcacggcgggcaaccagtggctcgcccaccgcatgaaagaccagggcgga
caggcgggtccgccctcgggatttccgcgcgacctcgagcccatgctcgcgacaccgggt
gaggtgaccggtctcgacgccgacgaatgggccttcgaagggaagtgggacggctaccgc
gccgtggccgagatcgagaacgggcagctgcggctgcattcgcgctccggccgcgacatc
accggcgactaccccgccctcgccgacctcacccgcgtcctcgacggacacgacgtcgtc
ctcgacggggaggtggtcgcgtgcgaccccggcggagtcacgagctttccgttgctgcgg
accggcggcaccccgcagtacttcgtgttcgacgtcctctacctcgacggggtgaccctg
taccgcaagccctacgccgaccggcgacgcgtgctcgacgcgctcgcggccgcgaccgac
ggattgatcgtgccggacgtgctgcgcggcaacggatccgaggcgctcgaggagagcacc
cggcgcggctgggaaggcgtggtggccaagcggcggaactcggtgtacgtgccgggccgg
cgcagccccgactgggtgaagtcgaagaactggctcactcaggacgtcgtcatcggtggc
tggcgcctcgggaagggggctcgtgccggcaccttcggctcgctgctggtcggcgtgcac
ggcgaggccgggctggagtacgtcggccgtgtcggcaccggcttcgacgaacccgagctc
gccgatctgtcggtcgccctggccggtctgcggcgccgcaccacccccttcgccggtgac
gttccgcgcgaggacgcgcgggacgctgtgtgggtgaccccgaaactggtgggggaggtg
cggttccgggaatggaccgacgccggcaagctctggcatccgagctggcgcgggctgcgc
gacgacatcgacccccaggacgtgaagaggcccgcgcagtag
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