Runella slithyformis: Runsl_0854
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Entry
Runsl_0854 CDS
T01553
Name
(GenBank) Holliday junction ATP-dependent DNA helicase ruvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
rsi
Runella slithyformis
Pathway
rsi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Runsl_0854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsi03400
]
Runsl_0854
Enzymes [BR:
rsi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Runsl_0854
DNA repair and recombination proteins [BR:
rsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Runsl_0854
RecFOR pathway proteins
Runsl_0854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_22
AAA_16
AAA_3
TIP49
Mg_chelatase
nSTAND3
NB-ARC
AAA_14
Rad17
RNA_helicase
AAA_PrkA
MCM
TsaE
Bac_DnaA
Sigma54_activ_2
NTPase_1
bpMoxR
AAA_18
AAA_33
ABC_tran
DUF815
AAA_24
AAA_19
AAA_17
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AEI47292
UniProt:
A0A7U3ZHG0
LinkDB
All DBs
Position
complement(1000671..1001702)
Genome browser
AA seq
343 aa
AA seq
DB search
MRQDYLTGTKDPLSPMEKEIDRALRPLSFSDFAGQDKILENIRVFVTAAKQRGEALDHVL
LHGPPGLGKTTLSNIISNELGATMKTSSGPVLDKPSDLAGLLTNLQPNDVLFIDEIHRLN
PVVEEYLYSAMEDYKIDIMLDSGPNARSIQISLNPFTLIGATTRAGLLTSPLRARFGINC
RLEYYDSDLLASIVKRSSAILGAPIDDAGAYEIARRSRGTPRIANNLLRRTRDFAQVKGS
GRITVEIAEIALKALDVDQHGLDEMDIRILSTIIEKFKGGPVGLSTIATACGDEAETIEE
VYEPFLIQEGFIKRTSRGREATEKAYRHLGIVPKFRTGDLFAE
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaagattacttaacaggaacgaaagatccgctctctccgatggaaaaggagata
gaccgggcgctgcgtccgctctctttcagcgattttgcgggacaggataaaatactcgaa
aacatacgggtctttgtcacggcagccaaacagcgtggcgaggctctcgaccacgtactg
ctgcacgggcctccgggattggggaaaactaccctttccaacatcatttccaacgagctg
ggagcgaccatgaaaacttcctccgggccggtgttggataagcccagtgacctggccggg
ctgctgaccaacctgcaacccaacgatgtgctgtttattgacgagattcaccgcctcaat
ccggtggtggaagaatacctctattcagccatggaggattacaaaatagacatcatgctg
gattcggggcccaatgcgcgaagtattcagatttccctgaatccgtttacgctgattggc
gcaaccacccgtgcggggctgctgacctctcctttgcgggcacggtttggcatcaattgc
cgcttggaatactacgactctgacctgttggcttctattgtgaaacgttcttcggccatc
ttaggcgcgcctattgatgatgccggtgcttatgagattgcccgacgcagtcgcgggacc
ccgcgtatcgccaacaacctgctgcgccgcacgcgcgacttcgcgcaggtaaaaggcagc
gggcgcattacggtcgagatcgccgagattgccctgaaagccctggacgtagaccaacac
gggttggacgaaatggatattcgtatcttatccaccatcatcgaaaaattcaaaggcggc
ccggtaggactttccaccatcgccaccgcctgcggcgacgaagccgaaaccattgaagag
gtgtatgaaccgtttctgattcaggaagggtttatcaaacggacgtcgcgcggtcgggaa
gctaccgaaaaagcttatcgccacttagggatcgtgcccaaatttcgaacgggggatctc
tttgccgaataa
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