Ralstonia pseudosolanacearum GMI1000: RSc0115
Help
Entry
RSc0115 CDS
T00071
Name
(GenBank) probable hemagglutinin-related autotransporter protein
Organism
rso
Ralstonia pseudosolanacearum GMI1000
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Autotransporter
Big_9
TIG
Cadherin_5
NtrZ
SprB
Motif
Other DBs
NCBI-ProteinID:
CAD13643
UniProt:
Q8Y366
LinkDB
All DBs
Position
complement(133929..138947)
Genome browser
AA seq
1672 aa
AA seq
DB search
MRKLIQTILLGWRLLAGLPVLGHLMARPCARTRQGVLAMLALGACQMMLSSPAWAAACTV
SFSTTANTQKSYVFTSGNTSSCDPFLIGIAYDSAGDANSSTGPVFNTATSQGGTIAIYNG
SVPPSGDPNTNGFVYTPPTNFSGTDTATFYTSNDGVTWLPNGTVSITVTSTAPTVTGISP
SSGGTGGGTSVAVTGTGFTGATAVKFGSTNAGSFTVNSATSITATSPAGSAGTVDLTVTT
SGGTSATSSADQFTYAAPPTANASSATVAHGSSSNAITLSISGGTPTSVAVSTAASHGTA
TASGTSITYTPTASYSGTDTFAYTASNAGGTSAAATVTITVSSATVSYAPASPAAGTVGT
AYSQSVASASGGTSPYTYALASGSLPPGLTLSTGGTLSGTPTSAGTFSFTVTATDSSTGT
GPFSATSGTLSLTIAAPTITVSPSTLTSPTVGAASSQSVSASGGTSPYTYAVTAGALPAG
MSLSSAGTLSGTPTAGGAFSFTATATDSTGGTGPYTGSRSYTLTVNAPTLSITPAAGSLS
ATSGVAYSQAFVAASGTAPYTYALSVNSGALPTGLSFNTATGMLSGTPTTAGTANFTVTG
TDSSTGTGPYTVSATYTLTTSAPTISLAPATLTGATVGTAYSQSVTASGGATPYTYAITS
GALPAGLNLNTGTGALTGTPTAAGTFSFTVRGTDANAFSGTRSYSLTVAAPTIALTPTTL
AGATVSSAYSQSVAASGGTAPYTYAVTSGALPAGLSLSSAGVLSGTPTAGGSFSVTISAT
DSTTGSGPFTGSRAYTLTVGSPTLTISPASTAGLTAMAGTSYSQSFSAGGGVSPYTYALT
VNTGTMPAGLSFHAASATLSGTPTTAGTVSFTVTATDGSSGAGPYAVSGTYTLTVSAPTL
TVAPATLPNPAIGTAYSQSITASSGTAPYTYAVTSGALPAGLSLSSAGVLSGTPTAGGSF
GFTVTATDANSFTASRAYSITIGAATVALNPATVPGATLNTAYSQTFTASGGIGPYTYAV
ASGTLPAGVSLNSTTGVLSGTPTALGSSTFSIRATDSSTGAGAPYTGTRGYTLVVGQAIG
TAPPVTATTTSTVPVTLHPTANATGGPFSSVVIVAAPASGTAVVNGMDIVYTPTPTTSGN
VAFTFALVNTAGTSAPIQATVTVNAVPIAVAQKTASTAAGQTVNVDLTDGATGGPFTGAA
IVSVVPANAGTATIMQQTSQTTAGVKALAAAAPVYLLSFTPASAFSGTATLTYTLSNAVS
TSTPAVVQVSVAPRRDPSTDPDVNGLINAQIQAARRFATTQIANYHQRLEALHGTGRAPS
GNGLTVALPGPRGDAQARCQDVFGIAARDACLRGDSTAGKPAFARGKRNADLQASRGDAD
AGPDLPGADATADAGQPDLAFWTAGTLDFGFANTSAQRSGFRFTTGGITAGADYRVSDRL
SVGAGFGYGRDSTDIGNAGTKSTGDSYSVALYGSYRPLPTLFVDGVAGFGTLSFDSRRWV
SDANDYAMGSRNGHQVFASVSAGYEHRDSVWLFSPYGRLSVSESTLDPFSETSAGLNALT
YFQQTVTTVSGSLGLRTEYAQKTRWGTFLPYARVEYQHDFNGQSNAGLAYADLASAGPAY
YVMGSPYGRDRMQVGLGTKFRTGPLTFGLDYSVMVGMGGLQQGVRLTFAAPF
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaagctgatacaaacgatcctgctcggctggcgcttgcttgccgggctgccggtg
ctcggacacctcatggcgcgcccgtgcgcccggacccgccagggtgtgctggcgatgctg
gcgctgggggcttgtcagatgatgctgtcgtccccggcatgggcggcggcgtgtacggtc
tccttctcgaccaccgccaatacgcagaagtcctacgtcttcacgagcggcaacacatcc
agttgcgacccgttcctgatcggcatcgcctacgattcggccggcgacgccaacagctcg
accgggccggtcttcaacacagcgacgtcgcagggcggcacgatcgcgatctacaacggt
tcggtgccgccgtcgggcgaccccaataccaacggcttcgtctacaccccgcccaccaat
ttctccggcaccgacacggccaccttctacaccagcaacgatggggtcacctggctgccc
aacggcacggtgtccatcacggtgaccagcaccgcgccgaccgtgacgggcatctcgccg
tcctcgggcggcaccggcggcggcaccagcgtcgccgtgacgggcaccggcttcaccggc
gcgaccgccgtcaagttcggctcgacgaacgccggcagcttcacggtcaacagcgccaca
tcgatcacggccacctcgcccgccggctcggcgggaacggtcgatctcaccgtgaccacc
tccggcggcaccagcgcgaccagctccgccgaccagttcacctatgccgccccgcccacg
gccaatgcgagcagcgccaccgtcgcccacggcagcagcagcaacgccatcacgctgagc
atcagcggcggcacgcccaccagcgtggccgtctcgacggccgccagccacggcacggcc
accgccagcggcacgtcgatcacctacacgcccacggcctcgtattcgggcaccgacacc
tttgcctacacggccagcaatgccggcggcacgtccgcggccgcaacggtgacgatcacg
gtgtccagcgccacggtcagctatgcgcccgcatcaccggcggccggcacggtgggcacg
gcgtatagccagtcggtggcctccgccagcggcggcacctcgccctacacctatgcgctc
gcgtccggctcgctgccgccgggcctgaccctgagcaccggcggcacgctcagcggcacg
cccacctccgccggcaccttcagcttcacggtcacggctaccgacagcagcaccggcacg
gggccgttctcggccaccagcggcacgctcagcctgacgatcgcagcgccgaccatcacc
gtatcgcccagcacgctgacgagcccgacggtcggggcggcctcctcccagtccgtcagc
gccagcggcgggacgtccccctacacctatgcggtcacggccggcgcgctgccggcgggc
atgagcctgtcgtcggccgggaccctgtcgggcacgcccacggcgggcggcgcgttcagc
ttcacggcaacggccaccgacagcaccggcggcacgggcccctataccggcagccgcagc
tacacgctcacggtcaacgccccgacactgtcgatcacgcccgcggcgggcagcctgagc
gcgaccagcggcgtcgcctatagccaagcgttcgtcgcggccagcggcacggcgccgtac
acctatgcgctatcggtcaactccggcgcgctgccgaccggcctgtcgttcaacaccgcc
accggcatgctgtccggcacaccgaccacggccggcacggccaacttcaccgtcacgggc
accgacagcagcaccggcaccggcccctacacggtctcggcaacctacacgctgaccacc
tccgcgccgaccatctcgctcgcccccgccacgctgaccggcgccacggtcggcacggca
tacagccagagcgtgacggccagcggcggcgcgacgccgtacacctacgccatcaccagc
ggcgcgctgccggcggggctcaacctgaataccggcaccggcgcgctcaccggcaccccg
accgccgccggcacgttcagcttcacggtgcgcggcaccgacgccaacgcattcagcggc
acccgcagctacagcctcaccgtggccgcgcccaccatcgcgctgacgccgaccacgctc
gccggcgccacggtcagctcggcctacagccagagcgtggcagccagcggcggcaccgcg
ccgtacacctatgccgtgaccagcggcgccctgccggcgggtctgtcgctcagcagcgcc
ggcgtgctgtccggcacgccgaccgcgggcggcagcttcagcgtcacgatcagcgccacc
gacagcaccacgggctcgggtccgttcaccggcagccgggcctatacgctgacggtcggc
tcgcccacgctgaccatctcgccggcctccaccgccgggctgaccgccatggccggcacg
agctacagccagagcttcagcgccggcggcggcgtcagcccctacacctacgcgctgacg
gtcaacaccggcacgatgcccgccggcctgtcgttccatgcggcctcggccacgctgtcc
ggcacgccgaccacggccgggacggtcagcttcaccgtcaccgccaccgacggcagctcg
ggcgcgggcccctatgccgtgtccggcacctacacgctgacggtcagcgcccccacgctg
accgtggccccggcaaccttgcccaacccggccatcggcacggcctacagccagtccatc
acggccagcagcgggaccgcgccgtacacctatgccgtgaccagcggcgcgctgccggcc
ggcctgtcgctgagcagcgcgggcgtgctgtcgggcacgccgacggcgggcggcagcttc
ggcttcaccgtcacggcaacggatgccaacagcttcaccgccagccgcgcctacagcatc
accatcggcgccgcgaccgtcgcgctgaatccggccaccgtgccgggcgccacgctcaac
acggcctacagccagacgttcacggccagcggcggcatcggtccgtacacttacgccgtg
gcctccggcacgctgccggccggcgtgagcctgaacagcaccaccggcgtactgagcggc
acgcccaccgccctgggcagcagcaccttcagcatccgggcaaccgacagcagcaccggc
gccggcgcgccctacaccggcacgcgcggctacacgctcgtggtcgggcaggccatcggg
accgcgccgcccgtgaccgcgaccaccacatccaccgtgccggtcacgctgcaccccacg
gccaatgcgaccggcgggccgttctcgtcggtggtgatcgtcgccgcgcccgcgagcggc
acggccgtggtcaacggcatggacatcgtctacacgcccaccccgaccacctcgggcaac
gtcgccttcaccttcgcgctggtcaacacggccggcacctccgcgccgatccaggcgacg
gtgaccgtcaatgccgtgccgatcgccgtggcgcagaagacggccagcacggcggcaggc
cagaccgtgaatgtcgacctcacggacggcgccaccggcgggccgttcaccggcgcggcc
attgtgtcggtggtaccggccaatgccggcacggcgaccatcatgcagcagacatcgcag
acgacggcgggcgtcaaggcgctcgcggcggccgcaccggtctacctgctcagctttacg
ccggcgagcgccttcagcggcacggccaccctgacctacacgctgtccaacgccgtctcc
acctccacgccggccgtcgtgcaggtgagcgtggcaccgcggcgcgatccgtccaccgat
ccggacgtcaacggcctgatcaatgcgcagatccaggccgcgcgccgcttcgccaccacg
cagatcgccaactaccatcagcggctcgaagccctgcacggcaccggccgcgcaccgtcg
ggcaacggcctcacggtggcgctgccgggcccgcgcggcgatgcgcaggcgcgctgccag
gacgtcttcggcattgccgcccgcgacgcctgcctgcgcggcgacagcaccgccggcaaa
ccggccttcgcgcgcggcaagcgcaacgctgacctccaggcaagtcggggcgacgcggat
gccggccccgacttgccgggagccgacgccaccgccgacgccggccagccggacctcgcc
ttctggaccgccggcacgctcgatttcggcttcgccaacaccagcgcgcagcgctcgggc
ttccgcttcacgaccggcggcatcacggcgggcgccgattaccgcgtatccgatcggctc
tccgtgggcgcgggcttcggctacgggcgcgattcgaccgacatcggcaacgccggcacc
aagagcaccggcgacagctacagcgtcgcgctctacggcagctatcgtccgctgcccacg
ctgttcgtcgatggcgtggccggcttcggcacgctgagcttcgattcgcgccgctgggtg
agcgatgccaatgactacgcgatgggctcgcgcaacgggcatcaggtcttcgcttcggtc
tcggcggggtatgagcaccgcgacagcgtctggctgttctcgccatacggacgcctgtcg
gtgtcggaatcgacgctggacccgttcagcgagaccagcgccgggctcaacgcgctgacg
tacttccagcagacggtgacgaccgtgtccggctccctgggcctgcgcacggaatacgcc
cagaaaacgcgctggggcacgttcctgccctatgcgcgcgtggagtatcagcacgacttc
aacggccagagcaacgccggcctcgcctatgcggacctggcatcggcgggccccgcctac
tacgtgatgggcagcccgtacggccgcgaccgcatgcaggtgggcctgggcaccaagttc
cgcaccggcccgctcacgttcggcctggactacagcgtgatggtcggcatgggtgggctg
cagcagggcgtgcggctgaccttcgcggcgccgttctga
DBGET
integrated database retrieval system
