KEGG   Rhizobium tropici: RTCIAT899_CH07375
Entry
RTCIAT899_CH07375 CDS       T02432                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rtr  Rhizobium tropici
Pathway
rtr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RTCIAT899_CH07375 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rtr03021]
    RTCIAT899_CH07375 (rpoB)
   03400 DNA repair and recombination proteins [BR:rtr03400]
    RTCIAT899_CH07375 (rpoB)
Enzymes [BR:rtr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RTCIAT899_CH07375 (rpoB)
Transcription machinery [BR:rtr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RTCIAT899_CH07375 (rpoB)
DNA repair and recombination proteins [BR:rtr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RTCIAT899_CH07375 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DOCK-C2
Other DBs
NCBI-ProteinID: AGB70874
LinkDB
Position
1506984..1511126
AA seq 1380 aa
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILSTFYTKSLYER
SGDGWRIPFKAETLKGAKTVTDMIDADTGEVVVEGGKKLTPRLLRQLQDKGLKALKATDE
ELYGLFLAEDIVNFQTGEIYLEAGDEIDEKTLPIILKAGFDEIPILGIDHINVGAYIRNT
LSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDVEDTVRILRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIIDGKVTNDVLYLSAMEEAKYYVAQANAELDADGSFIEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLMKFQRSNQNTCVNQRPLV
TVGDVVNKGDILADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLVEMLRGQVALAGPKGFKKGTELSNSVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIEAYKASGNIEPLRKTIDLVVGDGPKSDDVHEYDDASVLRLADQWKR
GVSIATPVFDGAGEADVNHMLAMAGLKQTGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDLQTASQLPDAAE
NT seq 4143 nt   +upstreamnt  +downstreamnt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagttttttggtaagatt
cccgaagtcgcagagatgccgaacctcatcgaggttcaaaaagcgtcctacgatcagttt
ctcatggtcgaagaacccaagggcggccgcccggacgaaggtctccaggccgtcttcaag
tcggttttcccgatcaccgatttctccggcgcttccatgctggagttcgtttcctatgaa
ttcgagccgccgaagttcgacgtcgacgagtgccgccagcgcgacctgacctatgcagcg
ccgctgaaggtgaccctccgtctgatcgtgttcgatatcgacgaggatacgggcgcgaag
tccatcaaggacatcaaggaacagagcgtctacatgggcgacatgccgctcatgacgaac
aacggtacgttcatcgtgaacggcaccgagcgcgtgatcgtgtcgcagatgcaccgttcg
ccgggcgtattcttcgatcacgacaagggcaagagccattcttccggcaagctgctcttt
gccgctcgcgtcattccgtatcgcggctcgtggcttgacatcgaattcgacgccaaggac
atcgtctacgcccgtatcgaccgtcgccgcaagattccggtgacgtcgctgctgatggca
cttggcatggacggcgaagaaattctgtcgaccttctacacgaagtcgctctatgaacgt
tccggcgatggctggcgcatccccttcaaggcggaaacgctcaagggcgccaagaccgtt
acggacatgatcgatgccgacaccggtgaagtcgtggtcgaaggcggcaagaagctcacg
ccgcgcctgctgcgccagctgcaggacaagggcctcaaggctctgaaggcgaccgacgaa
gagctgtatggcctgttcctggcagaagacatcgtcaacttccagaccggcgagatctat
ctcgaagccggcgacgaaatcgacgagaagacgctgcctatcatcctgaaggccggcttc
gacgagatcccgatcctcggcatcgaccacatcaatgtcggcgcctacatccgtaatacg
ctgtcggctgacaagaacgagaaccgccaggacgctctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gatgcggagcgttacgatctctccgccgtcggccgcgtgaagatgaacatgcgcctcgac
ctcgacgtcgaagacaccgtccgcatcctgcgcaaggacgacatcctggccgtggtcaag
atgcttgtcgaactgcgtgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgttcggtcggcgagctgatggaaaatcagtatcgtctgggtctgctgcgc
atggagcgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacacggtcatgccgcag
gatctgatcaacgcaaagccggctgctgctgctgtccgcgaattcttcggctcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctctcggcccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
catccgacgcactacgggcgtatttgcccgatcgaaacgccggaaggtccgaacatcggt
ctcatcaactcgctggcgacctttgcccgcgtcaacaagtacggcttcatcgaaagccct
tatcgccgcatcatcgacggtaaggtgaccaacgacgtgctctacctctccgccatggaa
gaggcgaagtactacgttgctcaggccaatgccgagctcgacgccgacggctccttcatc
gaggaattcgtcgtttgccgtcatgccggcgaagtcatgctcgctccgcgcgacaacatc
aacctgatggacgtctcgccgaagcagctggtttcggtcgctgccgctctgatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctcgaacatgcagcgtcaggccgtg
ccgctgctgcgtgccgaagctccgttcgtcggcaccggcatggagccggtcgtcgcgcgt
gactccggtgctgctatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcaacg
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtccggcgtcgatatctac
cgcctgatgaagttccagcgttcgaaccagaacacttgcgtcaaccagcgtccgctggtc
accgtcggtgatgtggtcaacaagggcgacattctggcggacggtccgtcgaccgacctc
ggcgatctggctctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgctctccgagcgtatcgttgccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgcgacaccaagctcggtccggaagaaatcacc
cgcgacattccgaacgtttcggaagaagcgctgaagaacctggacgaagccggcatcgtt
tacatcggcgccgaagttcagccgggcgatatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggcatcg
gacgttcgcgatacctccatgcgcatgccgcccggcacctacggtacggtcgtcgaagtt
cgcgtcttcaaccgtcacggcgtcgagaaggacgaacgtgccatggcgatcgagcgcgaa
gagatcgaacgccttgccaaggaccgtgacgacgaacaggcgatcctcgaccgtaacgtc
tacggccgtctggtcgagatgctgcgcggtcaggttgctcttgctggtccgaagggcttc
aagaagggcacggaactgtcgaattcagtcgtttccgagtatccgcgttcgcagtggtgg
atgtttgccgtcgaggacgaaaaggtccagagcgagctcgaagccctgcgtggccagtac
gacgaatccaagtcgcgtctcgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgacgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgctgttaaacgc
aagatccagccgggcgacaagatggcaggtcgtcacgggaacaagggcgtggtctcgcgc
attgttccggtcgaagacatgccgttccttgaagacggtacgcatgtcgatatcgtgctg
aacccgctgggcgttccctcgcgtatgaacgtcggtcagattctcgaaacgcaccttggc
tgggcttgcgccggcatgggtcgtcagatcggcgaactgatcgaagcctacaaggcgagc
ggcaacatcgaacctctgcgcaagacgatcgatctggtcgtcggcgacggtccgaagagc
gacgacgttcacgagtatgacgatgcgtcggtgctgcgtctggccgatcaatggaagcgt
ggcgtgtccatcgcgaccccggtcttcgacggtgctggcgaagctgacgtcaaccacatg
ctggcaatggcaggtctcaagcagaccggtcagtcgacgctgtacgatggtcgtaccggc
gagcagttcgaccgccaggtcacggttggctacatctacatgctgaagctgaaccacctt
gtcgacgacaagatccacgcccgctcgatcggtccgtactcgctcgttacccagcagccg
cttggtggtaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctc
gaagcttacggtgcagcctacacgctgcaggaaatgctcacggtcaagtcggacgacgtg
gccggtcgcaccaaggtctacgaagccatcgttcgtggcgacgacaccttcgaggcgggc
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctcagcgtcgaa
ctggaaaactccaaggtcgacgatctgcagacggcaagccagcttccggacgcagccgag
taa

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