Rhizobium tropici: RTCIAT899_CH07375
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Entry
RTCIAT899_CH07375 CDS
T02432
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RTCIAT899_CH07375 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtr03021
]
RTCIAT899_CH07375 (rpoB)
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH07375 (rpoB)
Enzymes [BR:
rtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RTCIAT899_CH07375 (rpoB)
Transcription machinery [BR:
rtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RTCIAT899_CH07375 (rpoB)
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RTCIAT899_CH07375 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AGB70874
LinkDB
All DBs
Position
1506984..1511126
Genome browser
AA seq
1380 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILSTFYTKSLYER
SGDGWRIPFKAETLKGAKTVTDMIDADTGEVVVEGGKKLTPRLLRQLQDKGLKALKATDE
ELYGLFLAEDIVNFQTGEIYLEAGDEIDEKTLPIILKAGFDEIPILGIDHINVGAYIRNT
LSADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDVEDTVRILRKDDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIIDGKVTNDVLYLSAMEEAKYYVAQANAELDADGSFIEEFVVCRHAGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLMKFQRSNQNTCVNQRPLV
TVGDVVNKGDILADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLVEMLRGQVALAGPKGFKKGTELSNSVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIEAYKASGNIEPLRKTIDLVVGDGPKSDDVHEYDDASVLRLADQWKR
GVSIATPVFDGAGEADVNHMLAMAGLKQTGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKVDDLQTASQLPDAAE
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagttttttggtaagatt
cccgaagtcgcagagatgccgaacctcatcgaggttcaaaaagcgtcctacgatcagttt
ctcatggtcgaagaacccaagggcggccgcccggacgaaggtctccaggccgtcttcaag
tcggttttcccgatcaccgatttctccggcgcttccatgctggagttcgtttcctatgaa
ttcgagccgccgaagttcgacgtcgacgagtgccgccagcgcgacctgacctatgcagcg
ccgctgaaggtgaccctccgtctgatcgtgttcgatatcgacgaggatacgggcgcgaag
tccatcaaggacatcaaggaacagagcgtctacatgggcgacatgccgctcatgacgaac
aacggtacgttcatcgtgaacggcaccgagcgcgtgatcgtgtcgcagatgcaccgttcg
ccgggcgtattcttcgatcacgacaagggcaagagccattcttccggcaagctgctcttt
gccgctcgcgtcattccgtatcgcggctcgtggcttgacatcgaattcgacgccaaggac
atcgtctacgcccgtatcgaccgtcgccgcaagattccggtgacgtcgctgctgatggca
cttggcatggacggcgaagaaattctgtcgaccttctacacgaagtcgctctatgaacgt
tccggcgatggctggcgcatccccttcaaggcggaaacgctcaagggcgccaagaccgtt
acggacatgatcgatgccgacaccggtgaagtcgtggtcgaaggcggcaagaagctcacg
ccgcgcctgctgcgccagctgcaggacaagggcctcaaggctctgaaggcgaccgacgaa
gagctgtatggcctgttcctggcagaagacatcgtcaacttccagaccggcgagatctat
ctcgaagccggcgacgaaatcgacgagaagacgctgcctatcatcctgaaggccggcttc
gacgagatcccgatcctcggcatcgaccacatcaatgtcggcgcctacatccgtaatacg
ctgtcggctgacaagaacgagaaccgccaggacgctctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gatgcggagcgttacgatctctccgccgtcggccgcgtgaagatgaacatgcgcctcgac
ctcgacgtcgaagacaccgtccgcatcctgcgcaaggacgacatcctggccgtggtcaag
atgcttgtcgaactgcgtgacggcaagggcgagatcgacgacatcgacaacctcggcaac
cgccgcgtccgttcggtcggcgagctgatggaaaatcagtatcgtctgggtctgctgcgc
atggagcgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacacggtcatgccgcag
gatctgatcaacgcaaagccggctgctgctgctgtccgcgaattcttcggctcctcgcag
ctgtcgcagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctctcggcccgggtggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtg
catccgacgcactacgggcgtatttgcccgatcgaaacgccggaaggtccgaacatcggt
ctcatcaactcgctggcgacctttgcccgcgtcaacaagtacggcttcatcgaaagccct
tatcgccgcatcatcgacggtaaggtgaccaacgacgtgctctacctctccgccatggaa
gaggcgaagtactacgttgctcaggccaatgccgagctcgacgccgacggctccttcatc
gaggaattcgtcgtttgccgtcatgccggcgaagtcatgctcgctccgcgcgacaacatc
aacctgatggacgtctcgccgaagcagctggtttcggtcgctgccgctctgatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctcgaacatgcagcgtcaggccgtg
ccgctgctgcgtgccgaagctccgttcgtcggcaccggcatggagccggtcgtcgcgcgt
gactccggtgctgctatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcaacg
cgtatcgttatccgcgccaccgaagacctcgatccgtcgaagtccggcgtcgatatctac
cgcctgatgaagttccagcgttcgaaccagaacacttgcgtcaaccagcgtccgctggtc
accgtcggtgatgtggtcaacaagggcgacattctggcggacggtccgtcgaccgacctc
ggcgatctggctctcggccgcaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagactcgatcctgctctccgagcgtatcgttgccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgcgacaccaagctcggtccggaagaaatcacc
cgcgacattccgaacgtttcggaagaagcgctgaagaacctggacgaagccggcatcgtt
tacatcggcgccgaagttcagccgggcgatatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctcctgcgcgccatcttcggtgaaaaggcatcg
gacgttcgcgatacctccatgcgcatgccgcccggcacctacggtacggtcgtcgaagtt
cgcgtcttcaaccgtcacggcgtcgagaaggacgaacgtgccatggcgatcgagcgcgaa
gagatcgaacgccttgccaaggaccgtgacgacgaacaggcgatcctcgaccgtaacgtc
tacggccgtctggtcgagatgctgcgcggtcaggttgctcttgctggtccgaagggcttc
aagaagggcacggaactgtcgaattcagtcgtttccgagtatccgcgttcgcagtggtgg
atgtttgccgtcgaggacgaaaaggtccagagcgagctcgaagccctgcgtggccagtac
gacgaatccaagtcgcgtctcgaacagcgcttcatggacaaggtcgaaaaggtccagcgc
ggcgacgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgtcgctgttaaacgc
aagatccagccgggcgacaagatggcaggtcgtcacgggaacaagggcgtggtctcgcgc
attgttccggtcgaagacatgccgttccttgaagacggtacgcatgtcgatatcgtgctg
aacccgctgggcgttccctcgcgtatgaacgtcggtcagattctcgaaacgcaccttggc
tgggcttgcgccggcatgggtcgtcagatcggcgaactgatcgaagcctacaaggcgagc
ggcaacatcgaacctctgcgcaagacgatcgatctggtcgtcggcgacggtccgaagagc
gacgacgttcacgagtatgacgatgcgtcggtgctgcgtctggccgatcaatggaagcgt
ggcgtgtccatcgcgaccccggtcttcgacggtgctggcgaagctgacgtcaaccacatg
ctggcaatggcaggtctcaagcagaccggtcagtcgacgctgtacgatggtcgtaccggc
gagcagttcgaccgccaggtcacggttggctacatctacatgctgaagctgaaccacctt
gtcgacgacaagatccacgcccgctcgatcggtccgtactcgctcgttacccagcagccg
cttggtggtaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctc
gaagcttacggtgcagcctacacgctgcaggaaatgctcacggtcaagtcggacgacgtg
gccggtcgcaccaaggtctacgaagccatcgttcgtggcgacgacaccttcgaggcgggc
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggcctcagcgtcgaa
ctggaaaactccaaggtcgacgatctgcagacggcaagccagcttccggacgcagccgag
taa
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integrated database retrieval system