Rufibacter sp. DG15C: TH61_11230
Help
Entry
TH61_11230 CDS
T04326
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH61_11230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rud03019
]
TH61_11230
03400 DNA repair and recombination proteins [BR:
rud03400
]
TH61_11230
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH61_11230
Messenger RNA biogenesis [BR:
rud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH61_11230
DNA repair and recombination proteins [BR:
rud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH61_11230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
RTBV_P12
Motif
Other DBs
NCBI-ProteinID:
AMM51631
UniProt:
A0A127B2K3
LinkDB
All DBs
Position
2623017..2625197
Genome browser
AA seq
726 aa
AA seq
DB search
MLVKQDNFLKNKLKEVFGYSQFRGNQEAIIQNIMEGKNTFVIMPTGAGKSLCYQLPALAM
EGTAIVISPLIALMKNQVDQLNAFGVNAQFLNSTLSKAEINRVKRETISGEVKLLYVAPE
SLTKEDTLDFLKQAKITFVAIDEAHCISEWGHDFRPEYRKIRGIIDSIGNLPIIALTATA
TPKVQLDIQRNLQMDDASVFKSSFNRTNLYYEVRPKHQTKKQVIKYIKKNKGKSGIIYCL
SRKKVEEIAELLRVNDVKALPYHAGLDAPIRMANQDAFLNEDADVIVATIAFGMGIDKPD
VRFVIHYDTPKSIEGYYQETGRAGRDGLEGNCLMFYSYDDIVKLEKFSKDKPVTERDNSK
LLLQEMASYADSAVCRRRQLLHYFGEMYNKDCGFCDNCVHPKEKFEAEKELILAIKTVQQ
TNERFPMDHLVNVLTGMKDQYVESYSHDQLEVYGAGKEHDAAYWSSVLRQALLFDYLEKD
IENFGTVKISDKGREYLQKPHPIKFAKDHNFEEEVQQEEEKVETQAAAGHDTVLFDMLKS
LRKKLAKEMNLPPYVLFQDPSIKEMATTYPTNKEDLSHIAGVGMGKAQKFGKPFLELITK
YVEENEIETAADVVVKTTVNKSKLKIYVIQQIDKKMDLEEIASSKSITMAELIEEIEHIC
YSGTKLNLDYYINGVLDHERQQEVMDYFMNATTDNMAEAMKELGTDDYTEDDLRLMRIKF
LSKYAN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgttagtgaaacaagacaattttttaaaaaacaaattaaaggaagttttcggctatagt
caatttaggggcaaccaagaagcgattatccaaaacatcatggaaggcaagaacacgttt
gtgatcatgcctaccggcgcgggcaagtcgctttgctaccagttgccagcgctggccatg
gagggaacggccattgtcatttcccctttaattgccctgatgaagaatcaggtggaccag
ctgaacgcctttggcgtgaacgcgcagttcctgaactccacgctttccaaagcagaaata
aaccgcgtaaaacgggagaccattagcggcgaagttaaattgctgtacgtggccccagag
tctttgaccaaagaagacaccctggatttcttaaagcaagccaagattacgtttgtagcc
attgacgaggcgcactgtatttctgagtggggtcatgacttcaggccagagtatcgcaaa
atcagaggcattattgacagcataggcaacctgcctattattgcccttaccgccacggcc
acaccaaaggtgcaactggacatacagcgcaacctgcagatggacgacgcatctgtgttc
aaatcctctttcaatagaaccaacctgtattatgaggtgcgccctaagcaccaaaccaaa
aaacaggtcatcaaatacatcaagaagaacaaaggcaaaagcggcatcatttactgcttg
agccgcaagaaggtagaagagatagccgagctcttgcgcgtgaacgatgtgaaagccttg
ccgtaccacgccggtttggacgcacccatcaggatggccaatcaagatgctttcttgaat
gaagacgccgacgtgattgtggccaccattgccttcggcatgggcattgacaagccagac
gtgcgctttgtgattcattatgatacgcctaagtccattgagggctattaccaggagaca
ggccgtgcaggacgggacggactggagggcaactgcctcatgttctacagctacgatgac
attgtcaagttggagaagttcagcaaggacaaaccggtcaccgagcgcgacaactccaaa
ctactgttgcaggagatggcctcttacgcagactcagcggtgtgtagaagaagacagcta
ttgcattactttggggagatgtacaacaaggactgtggcttctgcgacaactgcgtgcac
cccaaagagaagtttgaggctgagaaggaattgattctggccattaaaacggtgcagcag
accaatgagcgcttcccgatggatcacctggtgaacgtgctcacgggcatgaaagaccag
tacgtggaaagctacagccatgaccagctagaagtctatggcgctggcaaggagcacgac
gccgcttactggagctcggtgttgcgccaggctttgctgtttgactacctggagaaggac
attgagaacttcgggacggtgaagatttctgacaagggaagagagtacctgcagaagcca
caccctatcaagtttgctaaggaccataactttgaagaagaggtacagcaggaagaagag
aaggtagagacgcaggccgcggccgggcatgacaccgttctgtttgacatgctgaagtct
ttgcggaagaagctggccaaggagatgaacttgccaccatacgtgctcttccaggacccg
tccatcaaggagatggctaccacgtaccctaccaacaaagaggacctgtcacatattgca
ggcgtggggatgggcaaggcccagaagttcgggaagccgttcctggagctcatcaccaaa
tacgtagaggagaacgagattgaaaccgccgccgatgtggtggtgaaaaccacggtaaac
aagtctaagctcaaaatctacgtgattcagcagatagacaaaaaaatggacctggaggag
attgcctcttctaagtccattaccatggctgagttgattgaagagattgagcatatctgc
tactcgggcaccaaactcaacctggattactacatcaatggggtattggaccatgagcgc
cagcaggaagtgatggattactttatgaacgccaccactgacaacatggccgaggcgatg
aaagaactaggcactgatgattacaccgaggatgacttgcgtttgatgcgcatcaagttc
ttgtctaaatacgccaactaa
DBGET
integrated database retrieval system
