KEGG   Rhodomicrobium vannielii: Rvan_0633Help
Entry
Rvan_0633         CDS       T01353                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rva  Rhodomicrobium vannielii
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rva00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Rvan_0633
Enzymes [BR:rva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rvan_0633
DNA repair and recombination proteins [BR:rva03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rvan_0633
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
709780..712692
Genome map
AA seq 970 aa AA seqDB search
MPKGAASAPAKSKRGAPAVSAKGDLTRYRQKRDFAKTPEPSGTKQLAKAPELRFVIQKHA
ARRLHYDLRLELDGVYKSWAVTKGPSLDPAEKRLAVHVEDHPLDYGDFEGIIPPGEYGGG
TVMVWDRGTWEPEGDPAKGYAKGHLAFTAHGEKLKGRWHLIHIKPRPGEKDQQWLLFKSD
DEFARAAGDGDILEDAPDSVATGRSIDEIARDGEAVWSGKAGLVKGELSPAEGAEEWPAL
PKRKRRRTLADATGAAGAIRADRRASDEDAAKTTSRRIARRVAKAPVAQDADPVAAAPPP
AKSPARVAVATTAPAGAAKAVAGAKKAPFPGFVAPCLAQLCERAPDGDNWLHEIKFDGYR
VMALIENGRVRLMTRSGLDWTERFPAIAAAFAAFPAASAIVDGEAVVEDHTGVSSFSALQ
EALSTRKSKADIVFFAFDLLYFDGYDLRGASLESRKAALAPLVEAAAASALRYSDHVIGH
GPAMVENACRLGLEGIVSKRLDAPYRSGRHGAWLKTKCTNRQEFVVGGYAPSTAMHGAIG
SLALGAYDNGALLHVGRAGTGFTQATAKALFKQLQPLRRATSPFANALSSEEKRGLVHVE
PQLVAEVEFRGWTGDRHLRHAAFKGLREDKPATEVLFEMPRQQTAPDAAARERTTPARAR
ATPGKGGTVDFEGIRLTHPDRILWEGQGLTKLGLADYYAEVADHILPFITGRPLALVRCP
SGQGGDCFYQKRSFAGLTDAVEVVPIADKDGDTEALVIHDLRGLINLVQSNVLEIHPWGA
RIDDLERPDTLIFDLDPGDGVGFEAVMDGAREVRRRLGDLGIESWVKTTGGKGLHVVSPL
VPDLGWEELKAFAQGIAQTMERDAPQRFVSTMAKKARDGKIYVDYLRNGRGSTAIAPYST
RAREGAPVATPLGWDELGPALTPQRFTVETMGRRLAALKSDPWAGYFENPQRIESLGGRA
ARQPRRRPKS
NT seq 2913 nt NT seq  +upstreamnt  +downstreamnt
atgccgaagggcgccgcctcagcaccggcaaaatcgaagcgcggcgcgccggccgtctct
gcgaaaggcgacctcacgcgctaccgtcagaagcgcgacttcgcgaaaacgcctgagcca
tccggcacgaagcaactggccaaggcccctgagctgcgcttcgtcatccagaagcacgcg
gcgcggcggctgcattacgacctgcgccttgaactcgatggcgtctacaaaagctgggcg
gtgacgaaagggccgagcctcgatcccgccgaaaagcggctcgccgtgcatgtcgaggac
cacccgctcgactatggcgatttcgagggcatcatcccgccgggcgagtatggcggcggc
acggtcatggtctgggatcgcggtacgtgggagccggaaggcgaccccgcgaagggctac
gcgaaagggcatctcgccttcacggcgcacggcgagaaactcaagggccgctggcacctc
attcacatcaagccgaggccgggcgagaaggaccagcagtggcttctgttcaagtcagac
gacgaatttgcgcgcgcggcgggcgatggcgacatcctcgaagacgcgccggattcggtc
gcgacaggacgcagcatcgatgaaatcgcgcgcgacggcgaagcggtgtggtcaggcaag
gcggggcttgtgaagggcgagctttcgcctgcggagggcgcggaggagtggccagcgttg
ccgaaacgcaagcggcgtcgcacgctggctgatgccacgggcgcggcgggggccatccgt
gccgaccgccgcgcgtcggatgaggatgcggcgaagaccacgtcgcggcgaattgcgcgc
cgcgttgccaaagcacccgtagcgcaggatgccgaccctgtcgcagccgcaccgccaccc
gcgaagtcgcccgcccgcgtcgcggtggcaaccacggcacccgccggcgccgcgaaagcc
gtcgcgggcgcgaagaaagcgcccttccccggctttgtcgcgccatgcctcgcgcaactt
tgcgagcgcgcgcccgacggcgacaactggctgcacgaaatcaagttcgacggctaccgg
gtcatggcgctgatcgagaacggacgcgtgcgcctcatgacgcgcagtggcctcgactgg
acggagcgtttccccgcaatcgccgccgcgttcgccgcctttcccgccgcgtctgccatc
gtggacggtgaggccgtggtcgaggatcacacgggcgtgtcgagcttctcggcgctgcaa
gaggcgttgtccacccgcaaaagcaaagccgatatcgtcttcttcgccttcgaccttctc
tatttcgacggttacgacctgagaggcgcgagcctcgaatcacgcaaggccgcgctcgcg
ccgctggttgaagccgccgcagcgtcggcacttcgatattccgaccacgtcatcggtcac
ggcccggccatggtcgaaaacgcctgccgcctcggcctcgaaggcatcgtgtccaagcgc
ctcgacgcgccttaccgctccggccggcacggggcatggctcaagacgaaatgcacgaac
cggcaggaattcgtcgttggagggtacgcaccatcgaccgcgatgcacggcgctatcggt
agcctcgcgctcggcgcttatgacaacggcgcgctgctgcatgtgggccgcgccgggacc
ggcttcacgcaggcgaccgcgaaggcgctgttcaagcagctccagccgttgcggcgcgca
acctcgcccttcgccaatgcgttgtcgtcagaagaaaagcgcgggcttgttcatgtcgag
ccgcagctcgtcgccgaggtcgagtttcgcggctggacaggcgaccggcatctacgtcac
gccgcattcaagggcttgcgcgaagacaagcctgcaacggaggttctgttcgaaatgccg
cgtcaacagacagcccccgacgccgccgcccgcgaacgcaccacgcccgcgcgcgctcgt
gctacgcccgggaagggcggcaccgtcgatttcgaaggcatccggctcactcatcccgac
cgtattctctgggaggggcaggggctgacgaagctcggcctcgcggattattacgcagag
gtcgccgaccacattctgccgttcatcaccggccgcccacttgcgctcgtccgctgcccg
agcggccaaggcggcgattgcttctatcagaagcgatccttcgcgggcctcaccgacgcg
gtggaggtggtcccgattgccgacaaggacggcgacacggaggcgctcgtcatccacgat
ctgcgcggccttatcaatcttgtgcaatcgaacgtgctcgaaatccatccctggggcgcg
cgcatcgacgaccttgagcggcccgacacgctgattttcgatctcgatccgggcgatggc
gttggcttcgaagcggtcatggatggcgcgcgcgaggttcggcggcggctcggcgatctc
ggcatcgagtcgtgggtgaagacgaccggcggcaaggggctgcatgtggtgtcgccgctg
gtgccggatctcggctgggaggagttgaaggccttcgcccagggtatcgcgcagacgatg
gagcgggatgcgccgcagcgcttcgtttcgaccatggcgaagaaagcgcgcgacgggaaa
atctatgtcgattacctgcgcaacgggcgcggctcgacggccatcgcaccctattccacg
cgagcgcgcgagggcgcgccggtggcaacgccgcttggttgggacgaactcggcccggct
ctgacgccgcaaaggttcacggtcgaaacgatgggtcggcggctcgcagcgttgaagtcc
gatccgtgggcgggttatttcgagaatccgcagcgcatcgaaagccttggcgggcgagcg
gcgaggcaaccgagacggcgaccgaagtcttag

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