Rubrobacter xylanophilus: Rxyl_2016
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Entry
Rxyl_2016 CDS
T00368
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rxy
Rubrobacter xylanophilus
Pathway
rxy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rxy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rxyl_2016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rxy03400
]
Rxyl_2016
DNA repair and recombination proteins [BR:
rxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rxyl_2016
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rxyl_2016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
DnaJ_CXXCXGXG
nSTAND1
AAA_33
RsgA_GTPase
AAA_21
AAA_22
AAA_18
NACHT
Anti-TRAP
nSTAND3
Viral_helicase1
AAA_23
cobW
DUF4350
Motif
Other DBs
NCBI-ProteinID:
ABG04963
UniProt:
Q1AUG5
LinkDB
All DBs
Position
complement(2038820..2041591)
Genome browser
AA seq
923 aa
AA seq
DB search
MLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPEVDHIDGLSPAVS
IDQKTTSNNPRSTVATVTEIYDYLRLLYARAGRPHCHVCGFPVARSTPQQMVERVLALPE
RTRFMVLAPVVRGRKGEYGRLLRELAEEGYARVRVDGEVHELPVELELDKNRKHDIEVVV
DRLVMREGIERRLTDSIETALGLAEGLVQVETVGRDGSPGESMLFSESFTCTNCGASIAE
IQPRTFSFNSPHGACDRCDGLGSRLEIDPELVVPNEGLSVNEGAIAPWANSQSEYHASVL
AALSEKYGIDLDAPWRELPEEHRRLILYGTDGESIYVSYRNRYGRRRQYMTRFDGVIGNL
ERRYAETDSEYRRERIEEYMSHVPCPKCGGARLRPEALAVTVGGKNIYEFTQMSVTEAQS
FFDGVRFTQREWLIAERVVKEIRERLGFLVDVGLGYLTLSRAAGTLSGGEAQRIRLASQV
GSGLVGVLYVLDEPSIGLHQRDNRRLLNTLLRLRDLGNTLIVVEHDEETIRTADHIVDVG
PGAGVHGGEIVAQGTVEDIVAEPRSVTGDYLSGRRRIEPPGERRRPSGSVAVLGASEHNL
KGVDVEFPLGVFTCVTGVSGSGKSTLVNEILYKALANRVNRGKHRPGRHAGLRGVEQLDK
VIDIDQSPIGRTPRSNPATYTKVFDHIRALFAATPEAKIRGYKPGRFSFNVKGGRCEACR
GDGQIRIEMHFLPDVYVPCEVCKGRRYNAETLRVTYKGRSIADVLEMTVEEACEFFASVP
AISRRMQTLRDVGLGYIRLGQPATTLSGGEAQRVKLASELGKRATGRTLYILDEPTTGLH
FADVERLLGILHRLVDAGNTVIVIEHNLDVIRSADYIIDLGPEGGDGGGEVVAAGTPEEV
ARVERSHTGRFLRGLLPEVAAAS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
gtgctggtggtggtcacggggctctccgggagcgggaagtcctcgctcgccttcgacacc
atctacgccgaggggcagaggcgctacgtggagagcctctccgcctacgcccggcagttc
ctcgggcagatggacaagcccgaggtggaccacatcgacgggctctccccggcggtctcc
atagaccagaagaccacctccaacaacccgcgctccacggtggcgacggtcaccgagatc
tacgactacctccggctcctgtacgcccgcgccgggcgcccgcactgccacgtttgcggc
tttcccgtggcccgctccacgccgcagcagatggtggagagggtgctggcgctgccggag
aggacgcgcttcatggtgctcgcgccggtcgtgcgggggcgcaagggcgagtacgggagg
ctcctcagggagctggccgaggagggctacgcgcgggtgcgcgtcgacggcgaggtgcac
gagctgccggtggagctggagctggacaaaaaccgcaagcacgacatcgaggtggtggtg
gaccggctggtgatgcgggagggcatcgagcggcgcctgaccgactccatcgagaccgcc
ctcgggctggcggaggggctggtgcaggtggagaccgtcgggcgggacggctcgcccggc
gagtccatgctcttctccgagagcttcacctgcaccaactgcggggcctccatagccgag
atccagccgcgcaccttctcgttcaacagcccgcacggggcgtgcgaccgctgcgacggg
ctcgggagccggctggagatagacccggagctcgtggtcccgaacgaggggctgagcgtg
aacgagggggccatagccccctgggccaactcccagagcgagtaccacgcgagcgtgctc
gcggcgctctccgagaagtacgggatagacctcgacgccccgtggcgcgagctgcccgag
gagcacaggcggctcatcctctacgggacggacggggagagcatctacgtctcctaccgc
aaccgctacggccgccggcggcagtacatgacccgcttcgacggggtcatcggcaacctg
gagcgccgctacgccgagaccgactccgagtaccggcgggagaggatcgaggagtacatg
agccacgtcccctgccccaagtgcgggggggcgcgcctgcggcccgaggcgctcgccgtg
accgtcggcggcaagaacatctacgagttcacccagatgagcgtcaccgaggcgcagtcc
ttcttcgacggcgtccggttcacgcagcgggagtggctcatagcggagcgggtggtgaag
gagatccgggagcgcctcgggttcctggtggacgtcggcctcggctacctcactttgagc
cgcgcggccgggacgctctccggtggggaggcgcagcggatacggctcgcctcgcaggtg
gggagcgggctggtgggcgtgctctacgtgctcgacgagccctccatcgggctgcaccag
cgggacaaccgccggctgctgaacaccctcctgcggctgcgcgacctcggcaacacgctc
atcgtggtcgagcacgacgaggagacgatccggaccgccgaccacatagttgacgtgggg
ccgggggccggggtgcacggcggggagatcgtggcgcagggcacggtcgaggacatcgtc
gccgagccgcgctcggtgaccggggactacctctcggggcgccgcaggatagagcccccc
ggggagcgccgcaggccctccgggagcgtggcggtgctcggggcgagcgagcacaacctc
aagggcgtggacgtggagttcccgctcggggtcttcacgtgcgtcacgggggtctcgggg
tccgggaagagcacgctggtgaacgagatcctctacaaggccctcgccaaccgggtcaac
cgcggcaagcatcggcccgggaggcacgcggggttgcggggggtggagcagctggacaag
gtcatcgacatagaccagagccccatcggcaggaccccacgctccaaccccgccacctac
accaaggtcttcgaccacataagggcgctcttcgcggcgacgccggaggcgaagatcagg
ggctacaagccgggccggttctcgttcaacgtcaagggcggccggtgcgaggcgtgccgg
ggggacggccagatccgcatcgagatgcacttcctccccgacgtctacgtgccgtgcgag
gtctgcaagggccgccgctacaacgccgagaccctgcgcgtcacctacaagggccgctcc
atcgccgacgtgctggagatgaccgtcgaggaggcgtgcgagttcttcgcctccgtgccc
gcgatctcgcggcggatgcagaccctgcgcgacgtggggctcggctacatccggctgggg
cagccggcgaccaccctctccggcggggaggcgcagcgggtgaagctcgcgagcgagctc
ggcaaacgggcgaccggcaggaccctgtacatcctcgacgagcccacgacggggctgcac
ttcgccgacgtggagcggctgctcggcatcctgcaccggctcgtggacgcggggaacacg
gtcatcgtcatcgagcacaacctggacgtcatccgctccgcggactacatcatagacctc
ggccccgagggcggcgacgggggcggggaggtggtcgccgccggcaccccggaggaggtg
gcccgcgtcgagcggtcgcacaccgggcgctttctgcgcggcctgctcccggaggtggcg
gcggcgagctag
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