KEGG   Rubrobacter xylanophilus: Rxyl_2016
Entry
Rxyl_2016         CDS       T00368                                 
Name
(GenBank) Excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
rxy  Rubrobacter xylanophilus
Pathway
rxy03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rxy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Rxyl_2016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rxy03400]
    Rxyl_2016
DNA repair and recombination proteins [BR:rxy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Rxyl_2016
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Rxyl_2016
SSDB
Motif
Pfam: UvrA_DNA-bind UvrA_inter ABC_tran SMC_N AAA_16 AAA_29 DnaJ_CXXCXGXG nSTAND1 AAA_33 RsgA_GTPase AAA_21 AAA_22 AAA_18 NACHT Anti-TRAP nSTAND3 Viral_helicase1 AAA_23 cobW DUF4350
Other DBs
NCBI-ProteinID: ABG04963
UniProt: Q1AUG5
LinkDB
Position
complement(2038820..2041591)
AA seq 923 aa
MLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPEVDHIDGLSPAVS
IDQKTTSNNPRSTVATVTEIYDYLRLLYARAGRPHCHVCGFPVARSTPQQMVERVLALPE
RTRFMVLAPVVRGRKGEYGRLLRELAEEGYARVRVDGEVHELPVELELDKNRKHDIEVVV
DRLVMREGIERRLTDSIETALGLAEGLVQVETVGRDGSPGESMLFSESFTCTNCGASIAE
IQPRTFSFNSPHGACDRCDGLGSRLEIDPELVVPNEGLSVNEGAIAPWANSQSEYHASVL
AALSEKYGIDLDAPWRELPEEHRRLILYGTDGESIYVSYRNRYGRRRQYMTRFDGVIGNL
ERRYAETDSEYRRERIEEYMSHVPCPKCGGARLRPEALAVTVGGKNIYEFTQMSVTEAQS
FFDGVRFTQREWLIAERVVKEIRERLGFLVDVGLGYLTLSRAAGTLSGGEAQRIRLASQV
GSGLVGVLYVLDEPSIGLHQRDNRRLLNTLLRLRDLGNTLIVVEHDEETIRTADHIVDVG
PGAGVHGGEIVAQGTVEDIVAEPRSVTGDYLSGRRRIEPPGERRRPSGSVAVLGASEHNL
KGVDVEFPLGVFTCVTGVSGSGKSTLVNEILYKALANRVNRGKHRPGRHAGLRGVEQLDK
VIDIDQSPIGRTPRSNPATYTKVFDHIRALFAATPEAKIRGYKPGRFSFNVKGGRCEACR
GDGQIRIEMHFLPDVYVPCEVCKGRRYNAETLRVTYKGRSIADVLEMTVEEACEFFASVP
AISRRMQTLRDVGLGYIRLGQPATTLSGGEAQRVKLASELGKRATGRTLYILDEPTTGLH
FADVERLLGILHRLVDAGNTVIVIEHNLDVIRSADYIIDLGPEGGDGGGEVVAAGTPEEV
ARVERSHTGRFLRGLLPEVAAAS
NT seq 2772 nt   +upstreamnt  +downstreamnt
gtgctggtggtggtcacggggctctccgggagcgggaagtcctcgctcgccttcgacacc
atctacgccgaggggcagaggcgctacgtggagagcctctccgcctacgcccggcagttc
ctcgggcagatggacaagcccgaggtggaccacatcgacgggctctccccggcggtctcc
atagaccagaagaccacctccaacaacccgcgctccacggtggcgacggtcaccgagatc
tacgactacctccggctcctgtacgcccgcgccgggcgcccgcactgccacgtttgcggc
tttcccgtggcccgctccacgccgcagcagatggtggagagggtgctggcgctgccggag
aggacgcgcttcatggtgctcgcgccggtcgtgcgggggcgcaagggcgagtacgggagg
ctcctcagggagctggccgaggagggctacgcgcgggtgcgcgtcgacggcgaggtgcac
gagctgccggtggagctggagctggacaaaaaccgcaagcacgacatcgaggtggtggtg
gaccggctggtgatgcgggagggcatcgagcggcgcctgaccgactccatcgagaccgcc
ctcgggctggcggaggggctggtgcaggtggagaccgtcgggcgggacggctcgcccggc
gagtccatgctcttctccgagagcttcacctgcaccaactgcggggcctccatagccgag
atccagccgcgcaccttctcgttcaacagcccgcacggggcgtgcgaccgctgcgacggg
ctcgggagccggctggagatagacccggagctcgtggtcccgaacgaggggctgagcgtg
aacgagggggccatagccccctgggccaactcccagagcgagtaccacgcgagcgtgctc
gcggcgctctccgagaagtacgggatagacctcgacgccccgtggcgcgagctgcccgag
gagcacaggcggctcatcctctacgggacggacggggagagcatctacgtctcctaccgc
aaccgctacggccgccggcggcagtacatgacccgcttcgacggggtcatcggcaacctg
gagcgccgctacgccgagaccgactccgagtaccggcgggagaggatcgaggagtacatg
agccacgtcccctgccccaagtgcgggggggcgcgcctgcggcccgaggcgctcgccgtg
accgtcggcggcaagaacatctacgagttcacccagatgagcgtcaccgaggcgcagtcc
ttcttcgacggcgtccggttcacgcagcgggagtggctcatagcggagcgggtggtgaag
gagatccgggagcgcctcgggttcctggtggacgtcggcctcggctacctcactttgagc
cgcgcggccgggacgctctccggtggggaggcgcagcggatacggctcgcctcgcaggtg
gggagcgggctggtgggcgtgctctacgtgctcgacgagccctccatcgggctgcaccag
cgggacaaccgccggctgctgaacaccctcctgcggctgcgcgacctcggcaacacgctc
atcgtggtcgagcacgacgaggagacgatccggaccgccgaccacatagttgacgtgggg
ccgggggccggggtgcacggcggggagatcgtggcgcagggcacggtcgaggacatcgtc
gccgagccgcgctcggtgaccggggactacctctcggggcgccgcaggatagagcccccc
ggggagcgccgcaggccctccgggagcgtggcggtgctcggggcgagcgagcacaacctc
aagggcgtggacgtggagttcccgctcggggtcttcacgtgcgtcacgggggtctcgggg
tccgggaagagcacgctggtgaacgagatcctctacaaggccctcgccaaccgggtcaac
cgcggcaagcatcggcccgggaggcacgcggggttgcggggggtggagcagctggacaag
gtcatcgacatagaccagagccccatcggcaggaccccacgctccaaccccgccacctac
accaaggtcttcgaccacataagggcgctcttcgcggcgacgccggaggcgaagatcagg
ggctacaagccgggccggttctcgttcaacgtcaagggcggccggtgcgaggcgtgccgg
ggggacggccagatccgcatcgagatgcacttcctccccgacgtctacgtgccgtgcgag
gtctgcaagggccgccgctacaacgccgagaccctgcgcgtcacctacaagggccgctcc
atcgccgacgtgctggagatgaccgtcgaggaggcgtgcgagttcttcgcctccgtgccc
gcgatctcgcggcggatgcagaccctgcgcgacgtggggctcggctacatccggctgggg
cagccggcgaccaccctctccggcggggaggcgcagcgggtgaagctcgcgagcgagctc
ggcaaacgggcgaccggcaggaccctgtacatcctcgacgagcccacgacggggctgcac
ttcgccgacgtggagcggctgctcggcatcctgcaccggctcgtggacgcggggaacacg
gtcatcgtcatcgagcacaacctggacgtcatccgctccgcggactacatcatagacctc
ggccccgagggcggcgacgggggcggggaggtggtcgccgccggcaccccggaggaggtg
gcccgcgtcgagcggtcgcacaccgggcgctttctgcgcggcctgctcccggaggtggcg
gcggcgagctag

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