Simiduia agarivorans: M5M_12590
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Entry
M5M_12590 CDS
T02281
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
saga
Simiduia agarivorans
Pathway
saga03420
Nucleotide excision repair
saga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M5M_12590 (uvrD)
03430 Mismatch repair
M5M_12590 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saga03400
]
M5M_12590 (uvrD)
Enzymes [BR:
saga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M5M_12590 (uvrD)
DNA repair and recombination proteins [BR:
saga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M5M_12590 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
M5M_12590 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFU99672
UniProt:
K4L0L6
LinkDB
All DBs
Position
2771856..2774033
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AA seq
725 aa
AA seq
DB search
MDVSRLLDDLNDAQREAVSADPCNQLILAGAGSGKTRVLVHRIAWLIEVEQISPASVMAV
TFTNKAAREMRARLEQLLGLNPRAMWVGTFHGLCHRLLSMHNQEARLPQNFQILDSDDQV
RLIKRIINELNLDEKQWPAKQAAWWINGQKDEGRRAAHIDDGGDLYMKTHLAIYHRYEAA
CQSAGLVDFGELLLRALELLRDTPALLRHYQQRFPFILVDEFQDTNAVQYAWLRVLAGKS
ACVTAVGDDDQSIYGWRGARIENIQHFDRDFANTKTIRLEQNYRSTANILNAANAVIGNN
HGRLGKELWTAGDEGEKIALYAAYNEQDEARFITERIEQWHGQPNARLDQVAILYRSNAQ
SRVLEEALLRERIPYRIYGGQRFYERLEIKNALGYLRLINNPEDDTAFERVINTPTRGIG
EKSVDAIRQFARAEGCSLWQAASKMVEQKVLAARARSAVEAFQLLVTELQQSTVELPLGE
MVDKVIKGTGLLDFHRNEKGEKGQARVENLQELTNACGSFRGEDENLTELAEFLASAALD
AGEQQADEFEDAVQLMTLHSAKGLEFPLVFLAGMEENLFPHKMSAEEPGRLEEERRLAYV
GITRAMEKLYLTYAESRRMYGQENYNPLSRFVREIPNDLLEEVRIKASFSRPVSFDREAP
AGRAPLPDAVSESGLSLGQLVAHPMFGEGVITDFEGQGHNARVRVNFADAGSKLLVLRLA
KLEPL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcccgtctactcgatgatctcaatgacgcgcagcgcgaagccgtatcggct
gacccctgcaatcaactcattctggcgggcgccggctcgggcaagacccgggtgctggtg
caccggattgcctggctgatagaagtggagcagatatcgccggcctcggtgatggcagtt
acctttaccaataaggctgcgcgggaaatgcgcgcccggttggaacaactgctgggcctg
aacccacgtgccatgtgggtaggcacctttcatggcctttgccaccggttgttgtccatg
cacaaccaagaggccagattgccccaaaatttccagattctggactccgatgatcaggtc
aggttgatcaagcgcatcatcaacgaattgaatctggatgaaaaacagtggcccgcgaaa
caggccgcctggtggattaatggccagaaagatgaaggccgtcgcgccgctcacatcgac
gatggtggcgatctgtacatgaaaacccatctggcgatctatcatcgctacgaggccgcc
tgccagtctgccgggctggtggattttggcgaattgctgttgcgcgcgttggaattgctg
cgcgataccccggccctgttgcgccattaccaacaacgttttccctttattctggtcgac
gagtttcaggataccaacgcggtgcaatatgcctggttgcgggtacttgccggaaaaagc
gcctgtgtcactgcggtgggtgatgatgaccagtctatctatggctggcgcggtgcgcgt
attgaaaacatccagcattttgatcgggattttgccaacaccaaaacgatccggttggaa
caaaattaccgctctactgccaatatcctgaatgccgccaatgcggtcattggcaataac
cacggcagattgggaaaagagttgtggactgctggcgacgaaggcgaaaaaatcgcgctc
tatgccgcctacaacgagcaggacgaagcgcggtttattaccgagcgtatcgagcaatgg
catggccagcccaatgccagattggatcaggtggccatcctgtatcgctccaacgcccag
tcccgggtgctggaagaggcgcttttgcgcgagcgcattccctatcgcatctacggcggc
caacgattctacgagcggttagaaatcaaaaacgcattgggttatctgcgattgatcaat
aatccggaagatgacacagcgttcgagcgggtaatcaatacacctacgcgaggcatcggg
gagaaatcggtggatgccattcgccagttcgcccgtgccgaaggctgttcgctgtggcag
gccgctagcaaaatggttgaacagaaagtactggcggcgcgagcccgttcagcggtagag
gctttccagttgctggtcactgagctgcagcaaagcacggttgagctgcccttaggggaa
atggtcgataaggtcatcaaaggcactggattgctggattttcaccgcaacgaaaaaggc
gagaaaggtcaggcccgggtggaaaacttgcaggaactgactaacgcctgtggcagcttc
cggggagaagacgaaaatctgaccgagctggctgaattcctagcgtcggcagcactcgat
gcaggcgaacaacaggcagatgagttcgaagacgccgtgcaattgatgacattgcattca
gccaaggggctggaatttcccttggtttttctggccggcatggaggaaaacctgtttccc
cacaaaatgtcggcggaggagccaggcaggttggaagaggagcgccggttggcctacgtg
ggtatcacgcgggccatggagaagctttatctgacctatgccgaatcccgtcgtatgtac
ggccaggaaaattacaacccgctatcgcgctttgtgcgggaaatacccaatgacttattg
gaagaggtgcgcataaaagccagcttcagccggcccgtgagttttgatcgggaggcaccc
gcgggtcgcgcgccattgccggatgcagtgtcggaatccggtttatcgttggggcaattg
gtggcacaccccatgtttggtgaaggtgtgattaccgactttgaaggccaggggcacaat
gccagagtcagggtcaattttgccgatgccggcagcaagcttctggtgttacggctcgcc
aaactcgaacccctgtga
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