Staphylococcus agnetis: EP23_05660
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Entry
EP23_05660 CDS
T04155
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sagq
Staphylococcus agnetis
Brite
KEGG Orthology (KO) [BR:
sagq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sagq03009
]
EP23_05660 (rlmD)
Enzymes [BR:
sagq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EP23_05660 (rlmD)
Ribosome biogenesis [BR:
sagq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EP23_05660 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Met_10
Methyltransf_25
Cons_hypoth95
TRAM
Methyltransf_15
MTS
PrmA
Methyltransf_11
RrnaAD
TPMT
N6_N4_Mtase
Methyltransf_12
Methyltransf_23
Methyltransf_32
UPF0020
Motif
Other DBs
NCBI-ProteinID:
ALN76875
LinkDB
All DBs
Position
complement(1119147..1120517)
Genome browser
AA seq
456 aa
AA seq
DB search
MSVVHKNQMLEGEVVDLTHEGHGVVKIDAYPIFVPQTLVGERIDYKIIKVKKNFAIGKVI
TIKKESDARMVPPCDYYDKCGGCQLQHLNYEAQLEMKRNQVVNLFHRKGKLPHVPIHPTV
GMDHPWFYRNKSQIPVGGEKQQVEMGYYRQRSHHIINMDQCLIQYQAQNGIMRLLRDLLN
QYNIAPYQETVHQGLVRHVVIRKGYHSDEIMVTIVINGTELPHTHDIVNALVEAFPQIKS
IKININKEKSNVIMGAKSITLYGEETISDSLGELNFKINDKSFYQINVLQTEKLYNIAVN
YAGLTGAETVLDAYCGIGTIALSMADRAKHVYGVEVVPEAIEDAKRNAQLNHFNNTTFVA
GPAEKVILDWQKQGIRPVVVTVDPPRKGCDNTFIETLNQLEPDKIVYVSCNPSTQLRDIQ
LLLNKYDLIEVTPVDMFPHTTHVETVALLKRKKSDE
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggtacataaaaatcaaatgttagaaggagaagttgtcgatttaactcatgaa
gggcatggtgttgttaaaattgatgcttatcctatttttgtcccacaaacgctcgttgga
gaacgtatcgattacaaaatcattaaagtgaaaaagaatttcgctattggaaaagtcatc
acaataaaaaaggaaagtgatgcacgaatggtgccaccttgcgactattatgataaatgt
ggtggatgtcaacttcaacacttaaattatgaggcacaattagaaatgaaacgtaatcaa
gtggtgaatttgtttcatagaaaaggaaaattgccacatgtaccgattcatcctacagta
ggtatggatcatccatggttttatcgtaacaagtcacaaattcctgtgggtggtgagaaa
caacaagttgaaatgggctattatcgccaacgcagtcaccatattatcaatatggatcag
tgtttgatacaatatcaagctcaaaatggcattatgcgcttattgagagacttattaaat
caatacaatattgcaccttatcaagaaacagtacatcaaggtttagtaaggcatgtcgtt
attcgtaaaggataccatagcgatgaaatcatggtgaccattgtgattaatggaaccgaa
cttccacacactcatgacattgtcaatgcgttagtcgaagccttccctcaaattaaaagc
attaaaatcaatatcaataaagagaagtctaacgtcatcatgggtgctaaaagcataacg
ctttatggtgaggaaacgatttcagattcattaggggaattgaattttaaaataaatgac
aagtctttttaccaaattaatgtattgcaaactgaaaagctttataacattgcggttaat
tatgcaggattaacgggagcagagacggtattagatgcatattgtggtattggtacgatc
gcattatcaatggcagaccgagctaaacacgtttatggtgttgaagttgttcctgaggcg
attgaggatgcaaaacgcaatgcccaattaaatcatttcaataacacgacttttgtagca
ggtccagcagaaaaggttattttagattggcaaaaacagggtatacgccctgttgtggtt
acagtagatccgcctcgaaaagggtgtgacaatacgtttattgaaacactgaatcagtta
gaacctgacaaaatcgtctatgtatcttgtaatccaagcacgcaacttagagatattcaa
cttttattaaataagtatgatttaatcgaagtgacaccagtagacatgttccctcataca
acacatgttgaaactgtcgcacttttaaaacgcaaaaaaagtgatgaatag
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