Salmo salar (Atlantic salmon): 106570683
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Entry
106570683 CDS
T04363
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106570683 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
106570683 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106570683 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106570683 (gtf2h4)
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106570683 (gtf2h4)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106570683 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
106570683
NCBI-ProteinID:
XP_013998633
UniProt:
A0A1S3M5U3
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All DBs
Position
ssa14:86679476..86691731
Genome browser
AA seq
462 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGATPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAQVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQGLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcgttcagttacaatgcaagaacctccatgagtatttgaaagagttgagc
cctgagatcttagaccgcttgtacaatcatccggccacatgtctggctgtctacagggag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggctgcggtggctctttgggtgaaaaaagacagtgaaaaggatcatgatcagtgtgtg
tctgtgctgtctggtctcagactatggcacagccagcagctacagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcatgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgacgtggagagt
ctggataagtatgccttggagcgctgggaggtggttctccacttcatggttggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttcctcctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacctggtggagattctgtccttcttgttccagctcagtttctcgacactaggcagggac
tactcagtggaggggatgagtgaatctctgctcaccttcctacagcacctgagagagttt
ggcctcgtcttccagagaaagaggaagtctagaaggtactaccctaccaggctggccatc
accctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctaccccaggg
accggagattcaggtttcatcgtcgtggaaaccaactatcggctctatgcttatactaac
tctgagctgcagatcgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtagcccaggttaccagggagtcagtacagcaggccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgcttccccccaccatcacagaccagatcagactatgggagctggagagagatcga
ctacagttctctgagggagtgctgtataaccagttcctctcccaggctgacttcgaggtg
ttgcgggacagagcgcagggcctgggctgtctggtgtggcagaacgtggctcacagggtg
attgtggtttcaccgcagggacatggcgaagtcaagaggttctggaaacgacagaagagt
cacacttga
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