Salmo salar (Atlantic salmon): 106610502
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Entry
106610502 CDS
T04363
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106610502
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106610502
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106610502
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106610502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
106610502
NCBI-ProteinID:
XP_014065361
UniProt:
A0A1S3SM10
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Position
ssa01:complement(80586351..80615464)
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AA seq
1460 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCADPIIPNGECCPICPDDSETEGPQGPVVSETEGPEGGVGPKGDDGP
EGVPGNDGMDGQPGLPGPPGPPGPPGLGGGNFSPQMHHGYDEKSSGGQAQQGPMGPMGPR
GLPGPPGNTGPPGHHGPPGEPGEPGGAGPMGQRGTMGPPGKNGDNGEPGRSGRPGERGSA
GPQGARGTPGTPGLPGIKGHRGFNGMDGAKGDSGPAGPKGEGGAPGSSGNPGAMGARGLP
GERGRPGPAGPSGGRGNDGNSGPAGSPGPTGPSGSPGFPGGAGAKGETGPQGGRGSDGPQ
GSRGEPGNPGPAGAAGPSGAPGSDGQSGGKGATGAVGISGAPGFPGSRGPAGPPGAGGGP
GPKGNHGEQGAPGSKGEPGVKGEPGSSGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGER
GMPGMRGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSP
GPDGKVGPAGITGNDGRSGPPGSSGARGQPGVMGFPGPKGPAGDSGKPGERGEAGAVGGV
GAPGKDGDSGAPGPQGPAGGQGEKGEGGPAGPNGFQGLPGTQGATGEPGKPGDQGVPGEV
GGPGPSGSRGERGFPGERGGIGSVGPSGPRGPNGSPGNDGARGETGAAGAPGGMGAPGLQ
GMPGERGSGGNSGAKGERGDAGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLG
GPPGPAGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGEAGNNGPKGDAGAPGPGGPV
GAPGPQGPAGNAGTKGTRGAPGPPGASGMPGPGGRVGPPGGSGAPGPPGPPGPSGKEGQR
GGRGETGHAGRPGEAGAAGSPGPTGPSGAKGNDGPMGAPGTPGPGGIAGQRGIVGGPGGR
GPSGSPGVPGQAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVAGRD
GPPGPKGDRGENGHAGSPGAPGPPGAPGPAGASGKTGSRGESGPAGPAGPNGPAGGRGAL
GPAGARGDKGEAGEGGERGHKGHRGLSGMPGLPGPAGSPGESGPAGLNGPSGPRGPHGSS
GSTGKDGMNGLPGPIGPPGPRGRNGEMGPAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKG
PDPMRGGGGYHYRADEPDMMNDRDMEVDTTLKSLSQKVENIRSPEGTQKNPARMCRDIRM
CHPEWKSGQYWVDPNQGSPLDAVQVFCNMETGETCVYPSQDSVPMKNWYTSKNIREKKHI
WFSESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSVAYMDKGTGNL
KKALLLQGSNEIEIRAEGNSRFTYTVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAP
MDVGAPDQEFGVEVGPVCFV
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctgagcgcaacagtactattggcg
agaggtcaaggagaggacgatagtggattcggcagctgctcgttggacggccaacagtac
aacgataaggatgtgtggaaacctgaaccctgccagatctgcgtctgcgacagcggaacc
gttatgtgtgacgaagtgatttgtgaggacacaaccgactgcgccgaccctatcatcccc
aacggcgaatgctgtcctatctgccccgatgactccgagacggagggtccccaggggcca
gtagtgtctgagacagagggaccagagggaggagttggccccaagggtgatgatggtcct
gagggtgttcccggtaacgatggcatggacggccagcctggccttcccggccccccaggc
ccccctggacctcctggtcttggcggtggaaacttctctcctcagatgcaccatggttat
gacgagaaatccagcggaggccaggcccaacagggaccaatgggcccaatgggtccccgt
ggtctccctggcccaccaggtaacactggtccccccggtcatcatggtccccctggcgag
cccggtgagcctggcggtgctggtcccatgggtcaacgtggtacaatgggccccccaggc
aagaacggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgct
ggccctcagggtgctcgtggaacccctggaactcctggcctccccggcatcaagggacac
agaggtttcaatggaatggatggtgccaagggagacagtggcccagccggccctaaggga
gagggtggtgcccctggatccagcggtaaccccggtgctatgggtgctcgtggtcttcct
ggtgagagaggccgccccggacccgctggaccttctggtggccgtggtaatgatggcaac
tctggtcctgctggatcccctggacccactggcccatctggttcccctggattccccgga
ggtgctggagctaagggagagaccggtcctcagggaggccgtggctcagacggaccccaa
ggatctcgtggagagcccggtaaccctggacccgctggtgctgctggaccctctggtgcc
cccggaagtgatggccaatcaggaggcaagggtgccactggtgctgttggtatctctggt
gctcctggtttcccaggatcccgtggccccgctggacctcccggagctggtggtggcccc
ggccccaagggtaaccatggtgagcaaggagccccaggctccaagggagagcccggtgta
aagggagagcctggttcctctggtcctggcggcccccctggcccatctggggaggaggga
aagagaggtgcccgtggtgagcctggtggagctggtggtgttggaccccctggggagcgt
ggtatgcctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggc
cctggtgagcgtggagccaatggaccaatgggagcccaaggtgccactggtgaggctggt
cgccccggggagcctggcatgcctggatccaagggtatgactggtagccctggcagccct
ggccctgatgggaaagttggccctgctggtatcactggaaacgatggtcgctccggaccc
ccaggctcctctggagccagaggtcagcctggagttatgggattccccggacccaaagga
cctgctggtgacagcggcaagcccggtgagagaggagaagccggagctgttgggggtgtt
ggcgcccctggcaaagatggtgactctggtgctcccggaccccaaggccctgctggaggt
caaggagagaaaggagagggcggccccgctggtcctaacggattccagggtctgcctgga
actcagggagctactggtgagcctggcaagcctggtgatcagggtgtgcctggtgaggtt
ggaggtcccggccccagtggatccagaggtgaaagaggtttcccaggtgagcgtggtggc
atcggctctgttggcccctctggaccccgtggacctaatggttctcctggtaacgatggt
gctcggggtgagactggagctgctggtgcccctggcggtatgggagccccaggtctgcaa
ggaatgcccggagagcgtggctcaggtggcaactccggtgccaagggagaacgaggtgat
gctggccccaagggagccgacggtggcccaggaaaagacggcatgcgtggtatgactgga
cccatcggaccccccggacccactggtgctcatggagagaagggtgagggtggtcttggt
ggcccccctggacccgctggaggtcgcggttcccctggcgagcgtggtgagcatggtgcc
cctggacctgctggattcgctggaccccctggtgctgatggtcagcctggcaacaaggga
gaggctggtaacaatggccccaagggtgatgctggtgctcctgggcccggtggaccggtt
ggtgctcctggacctcagggtcctgctggtaatgctggtactaaaggaactcgtggtgcc
cctgggccccctggtgcttctggtatgcctggtcctggtggaagagttggccctcctggt
ggaagtggagcccccggacccccaggcccccccggaccctctggtaaagagggacagagg
ggtggacgtggtgaaactggtcacgctggtcgccccggtgaggctggagccgccggatcc
ccaggacccacaggaccatctggagccaagggtaatgatggcccaatgggagcccctgga
acccccggacccggaggtattgctggacagcgtggtattgtggggggcccaggaggaagg
ggacccagtggtagcccaggagttccaggacaagctggggagcctggtaagcagggacct
ggcggccccgtcggtgagcgtggatcccctggccccatgggaccccctggcctgtctggt
gcacccggtgaggctggtcgtgagggttccactggtcacgatggtgttgccggtcgcgat
ggaccccccggtcccaagggtgaccgtggtgagaatggtcatgccggttcccctggtgct
cccggacctcccggtgcccccggtcccgctggtgcttctggaaagactggtagccgtgga
gagtctggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtggggctctt
ggccctgctggtgctcggggagacaagggagaggctggagagggtggagagagaggccac
aagggacacagaggtttgagcggcatgcccggacttcctggacccgctggatcccctgga
gagtctgggcctgctggacttaacggaccttctggaccccgaggaccccatggttcttct
ggctccactggtaaagatggcatgaacggtctgcctggacccatcggaccccccggaccc
cgtggtcgcaacggagagatgggacctgctggtgctcctggttctcctggtctgcccgga
cccccaggtcccgctggtggcggcttccatgtcgcaccgatctacaaccaggagaaggga
cctgaccccatgcgaggaggaggaggataccactaccgtgctgatgagcctgacatgatg
aacgaccgtgacatggaggtggacaccaccctgaagagcctcagccagaaggtggagaac
atccgcagccctgagggaactcagaagaaccccgcccgcatgtgccgtgacatcaggatg
tgccaccctgagtggaagagcggccagtactgggtggaccccaaccagggttctcctctg
gatgctgtccaggtcttctgcaacatggagactggagagacctgcgtctacccatcccag
gactccgtccccatgaagaactggtataccagcaagaacatcagggagaagaagcacatc
tggttctcagagtctatggacaacggcttccagttccagtatggtagcgagggatccaac
ccagaagacgtcaacatccagctgaccttcatgcgcctgatgtccaacgaggcgtcccag
aatgtcacgtaccactgcaagaacagtgtggcctacatggacaagggcacgggcaacctg
aagaaggccctgctgctccagggatccaacgagatcgagatcagagcagagggcaacagc
cgcttcacctacaccgtcagcgaggacggctgcacgtcacatactggcacatggggcaag
acagtcatcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcct
atggacgttggtgcacctgatcaggagtttggcgtcgaagttggccctgtctgcttcgta
taa
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