KEGG   Salmo salar (Atlantic salmon): 106610502
Entry
106610502         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(I) chain-like
  KO
K06236  collagen type I alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106610502
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106610502
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106610502
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106610502
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 106610502
NCBI-ProteinID: XP_014065361
UniProt: A0A1S3SM10
LinkDB
Position
ssa01:complement(80586351..80615464)
AA seq 1460 aa
MFSFVDIRLALLLSATVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCADPIIPNGECCPICPDDSETEGPQGPVVSETEGPEGGVGPKGDDGP
EGVPGNDGMDGQPGLPGPPGPPGPPGLGGGNFSPQMHHGYDEKSSGGQAQQGPMGPMGPR
GLPGPPGNTGPPGHHGPPGEPGEPGGAGPMGQRGTMGPPGKNGDNGEPGRSGRPGERGSA
GPQGARGTPGTPGLPGIKGHRGFNGMDGAKGDSGPAGPKGEGGAPGSSGNPGAMGARGLP
GERGRPGPAGPSGGRGNDGNSGPAGSPGPTGPSGSPGFPGGAGAKGETGPQGGRGSDGPQ
GSRGEPGNPGPAGAAGPSGAPGSDGQSGGKGATGAVGISGAPGFPGSRGPAGPPGAGGGP
GPKGNHGEQGAPGSKGEPGVKGEPGSSGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGER
GMPGMRGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSP
GPDGKVGPAGITGNDGRSGPPGSSGARGQPGVMGFPGPKGPAGDSGKPGERGEAGAVGGV
GAPGKDGDSGAPGPQGPAGGQGEKGEGGPAGPNGFQGLPGTQGATGEPGKPGDQGVPGEV
GGPGPSGSRGERGFPGERGGIGSVGPSGPRGPNGSPGNDGARGETGAAGAPGGMGAPGLQ
GMPGERGSGGNSGAKGERGDAGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLG
GPPGPAGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGEAGNNGPKGDAGAPGPGGPV
GAPGPQGPAGNAGTKGTRGAPGPPGASGMPGPGGRVGPPGGSGAPGPPGPPGPSGKEGQR
GGRGETGHAGRPGEAGAAGSPGPTGPSGAKGNDGPMGAPGTPGPGGIAGQRGIVGGPGGR
GPSGSPGVPGQAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVAGRD
GPPGPKGDRGENGHAGSPGAPGPPGAPGPAGASGKTGSRGESGPAGPAGPNGPAGGRGAL
GPAGARGDKGEAGEGGERGHKGHRGLSGMPGLPGPAGSPGESGPAGLNGPSGPRGPHGSS
GSTGKDGMNGLPGPIGPPGPRGRNGEMGPAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKG
PDPMRGGGGYHYRADEPDMMNDRDMEVDTTLKSLSQKVENIRSPEGTQKNPARMCRDIRM
CHPEWKSGQYWVDPNQGSPLDAVQVFCNMETGETCVYPSQDSVPMKNWYTSKNIREKKHI
WFSESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSVAYMDKGTGNL
KKALLLQGSNEIEIRAEGNSRFTYTVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAP
MDVGAPDQEFGVEVGPVCFV
NT seq 4383 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgctgttgctgagcgcaacagtactattggcg
agaggtcaaggagaggacgatagtggattcggcagctgctcgttggacggccaacagtac
aacgataaggatgtgtggaaacctgaaccctgccagatctgcgtctgcgacagcggaacc
gttatgtgtgacgaagtgatttgtgaggacacaaccgactgcgccgaccctatcatcccc
aacggcgaatgctgtcctatctgccccgatgactccgagacggagggtccccaggggcca
gtagtgtctgagacagagggaccagagggaggagttggccccaagggtgatgatggtcct
gagggtgttcccggtaacgatggcatggacggccagcctggccttcccggccccccaggc
ccccctggacctcctggtcttggcggtggaaacttctctcctcagatgcaccatggttat
gacgagaaatccagcggaggccaggcccaacagggaccaatgggcccaatgggtccccgt
ggtctccctggcccaccaggtaacactggtccccccggtcatcatggtccccctggcgag
cccggtgagcctggcggtgctggtcccatgggtcaacgtggtacaatgggccccccaggc
aagaacggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgct
ggccctcagggtgctcgtggaacccctggaactcctggcctccccggcatcaagggacac
agaggtttcaatggaatggatggtgccaagggagacagtggcccagccggccctaaggga
gagggtggtgcccctggatccagcggtaaccccggtgctatgggtgctcgtggtcttcct
ggtgagagaggccgccccggacccgctggaccttctggtggccgtggtaatgatggcaac
tctggtcctgctggatcccctggacccactggcccatctggttcccctggattccccgga
ggtgctggagctaagggagagaccggtcctcagggaggccgtggctcagacggaccccaa
ggatctcgtggagagcccggtaaccctggacccgctggtgctgctggaccctctggtgcc
cccggaagtgatggccaatcaggaggcaagggtgccactggtgctgttggtatctctggt
gctcctggtttcccaggatcccgtggccccgctggacctcccggagctggtggtggcccc
ggccccaagggtaaccatggtgagcaaggagccccaggctccaagggagagcccggtgta
aagggagagcctggttcctctggtcctggcggcccccctggcccatctggggaggaggga
aagagaggtgcccgtggtgagcctggtggagctggtggtgttggaccccctggggagcgt
ggtatgcctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggc
cctggtgagcgtggagccaatggaccaatgggagcccaaggtgccactggtgaggctggt
cgccccggggagcctggcatgcctggatccaagggtatgactggtagccctggcagccct
ggccctgatgggaaagttggccctgctggtatcactggaaacgatggtcgctccggaccc
ccaggctcctctggagccagaggtcagcctggagttatgggattccccggacccaaagga
cctgctggtgacagcggcaagcccggtgagagaggagaagccggagctgttgggggtgtt
ggcgcccctggcaaagatggtgactctggtgctcccggaccccaaggccctgctggaggt
caaggagagaaaggagagggcggccccgctggtcctaacggattccagggtctgcctgga
actcagggagctactggtgagcctggcaagcctggtgatcagggtgtgcctggtgaggtt
ggaggtcccggccccagtggatccagaggtgaaagaggtttcccaggtgagcgtggtggc
atcggctctgttggcccctctggaccccgtggacctaatggttctcctggtaacgatggt
gctcggggtgagactggagctgctggtgcccctggcggtatgggagccccaggtctgcaa
ggaatgcccggagagcgtggctcaggtggcaactccggtgccaagggagaacgaggtgat
gctggccccaagggagccgacggtggcccaggaaaagacggcatgcgtggtatgactgga
cccatcggaccccccggacccactggtgctcatggagagaagggtgagggtggtcttggt
ggcccccctggacccgctggaggtcgcggttcccctggcgagcgtggtgagcatggtgcc
cctggacctgctggattcgctggaccccctggtgctgatggtcagcctggcaacaaggga
gaggctggtaacaatggccccaagggtgatgctggtgctcctgggcccggtggaccggtt
ggtgctcctggacctcagggtcctgctggtaatgctggtactaaaggaactcgtggtgcc
cctgggccccctggtgcttctggtatgcctggtcctggtggaagagttggccctcctggt
ggaagtggagcccccggacccccaggcccccccggaccctctggtaaagagggacagagg
ggtggacgtggtgaaactggtcacgctggtcgccccggtgaggctggagccgccggatcc
ccaggacccacaggaccatctggagccaagggtaatgatggcccaatgggagcccctgga
acccccggacccggaggtattgctggacagcgtggtattgtggggggcccaggaggaagg
ggacccagtggtagcccaggagttccaggacaagctggggagcctggtaagcagggacct
ggcggccccgtcggtgagcgtggatcccctggccccatgggaccccctggcctgtctggt
gcacccggtgaggctggtcgtgagggttccactggtcacgatggtgttgccggtcgcgat
ggaccccccggtcccaagggtgaccgtggtgagaatggtcatgccggttcccctggtgct
cccggacctcccggtgcccccggtcccgctggtgcttctggaaagactggtagccgtgga
gagtctggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtggggctctt
ggccctgctggtgctcggggagacaagggagaggctggagagggtggagagagaggccac
aagggacacagaggtttgagcggcatgcccggacttcctggacccgctggatcccctgga
gagtctgggcctgctggacttaacggaccttctggaccccgaggaccccatggttcttct
ggctccactggtaaagatggcatgaacggtctgcctggacccatcggaccccccggaccc
cgtggtcgcaacggagagatgggacctgctggtgctcctggttctcctggtctgcccgga
cccccaggtcccgctggtggcggcttccatgtcgcaccgatctacaaccaggagaaggga
cctgaccccatgcgaggaggaggaggataccactaccgtgctgatgagcctgacatgatg
aacgaccgtgacatggaggtggacaccaccctgaagagcctcagccagaaggtggagaac
atccgcagccctgagggaactcagaagaaccccgcccgcatgtgccgtgacatcaggatg
tgccaccctgagtggaagagcggccagtactgggtggaccccaaccagggttctcctctg
gatgctgtccaggtcttctgcaacatggagactggagagacctgcgtctacccatcccag
gactccgtccccatgaagaactggtataccagcaagaacatcagggagaagaagcacatc
tggttctcagagtctatggacaacggcttccagttccagtatggtagcgagggatccaac
ccagaagacgtcaacatccagctgaccttcatgcgcctgatgtccaacgaggcgtcccag
aatgtcacgtaccactgcaagaacagtgtggcctacatggacaagggcacgggcaacctg
aagaaggccctgctgctccagggatccaacgagatcgagatcagagcagagggcaacagc
cgcttcacctacaccgtcagcgaggacggctgcacgtcacatactggcacatggggcaag
acagtcatcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcct
atggacgttggtgcacctgatcaggagtttggcgtcgaagttggccctgtctgcttcgta
taa

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