Streptomyces bingchenggensis: SBI_04314
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Entry
SBI_04314 CDS
T01678
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbh
Streptomyces bingchenggensis
Pathway
sbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SBI_04314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbh03400
]
SBI_04314
Enzymes [BR:
sbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SBI_04314
DNA repair and recombination proteins [BR:
sbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SBI_04314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
TRCF
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ADI07435
UniProt:
D7BTJ6
LinkDB
All DBs
Position
complement(5433480..5437082)
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AA seq
1200 aa
AA seq
DB search
MSLTGLLDAVVRDPALAEAVQAAADGGRHHVDLVGPPAARPFAVAALARSAGRPVLAVTA
TGREAEDLAAALRSLLPPDRVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRVDDP
AAGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRSGQSADLEEIVDGLAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEEVRRRAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPAGSMAV
VCEPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELGMM
WWSVSPFAADEDVEEDTLKLGMRAPETYRGDTARALADTKGWLADGWHTVYVTEAHGPAS
RTVEVLGGEGIAARLDGDLAEIKPSVVHVACGSIEYGFVDPGLKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLSLQAGDFIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLFVPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIGEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYGQFPVVVKALSRFQTDTEARA
VLEGLRDGAVDIVIGTHRLFSSETKFKDLGLVVVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSENVLEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEAGG
EPEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASASNEEDIRHVREELTDRYGKL
PEPVENLLLRQAAGAGGEPAAGRGAAAAGAGLRGRRHHAPGLQHPLRAGRAARIAGAAAG
AALPEVRGQACHQAGAGAPAGDGQDRREAAGGAGSAGVDRGVPDHDPGGVAGRPRVCGGY
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgagccttaccggtctgctcgacgccgtcgtacgggaccccgcgctcgccgaggcggtt
caggccgccgctgacggcgggcggcaccatgttgatctggtcggcccgccggccgcccgg
ccctttgccgttgccgcgctggcgcggtccgccgggcggccggtgttggcggtgacggcc
acggggcgggaggccgaggatctggccgccgcgttgcggtcgctgctgccgccggaccgg
gtggtggagtacccgtcgtgggagacgctgccgcatgagcggctgtcgccgcggtcggac
acggtcggccggcggctggcggtgctgcggcggctggcgcatccgagggtggacgatccg
gcggccggtcccgtgtcggtggtggtcgcgccggtgcggtcggtgttgcagccgcaggtc
aaggggttgggggacctggagcctgtgagtctgcggtcggggcagagcgccgatctggag
gagatcgtcgacgggctggcggcggccgcgtacgcgcgggtggagctggtcgagaagcgc
ggcgagttcgcggtgcgcggtgggattctggatgtttttccgccgaccgaggagcatccg
ctccggatcgagttctggggcgacgatgtcgaggagatccggtatttcaaggtcgccgac
cagagatccctggaggtcgccgagcacgggctgtgggccccgccctgccgtgagctgctg
ctgacggaggaggtgcggcggcgggccgcggcgctggccgaggaccatccggagctgggc
gagctgctgggcaagatcgcggaggggatcgcggtcgagggcatggagtcgctggcgccc
gtgctcgtggacgacatggagctgctgctggatgtgttgccggcgggcagcatggccgtg
gtctgcgagccggagcgggtgcggaccagggccgcggacctggtggcgacgagccaggag
tttctgcaggcgtcctgggcggccacggccggtggcggggaggcgccgatcgatgtgggc
gcggcctcgctgtggggtatcgccgacgtccgcgaccgggcgcgtgagctgggcatgatg
tggtggtcggtgagcccgttcgcggccgacgaggacgtcgaggaggacacgctcaagctg
ggcatgcgcgcccccgagacgtaccggggcgacaccgcccgcgcgctcgccgacaccaag
gggtggctggccgacggctggcacacggtgtatgtgaccgaggcccacggcccggcgtcc
cgtacggtcgaggtgctgggcggcgaggggatcgcggcgcggctggacggggacctcgcc
gagatcaagccgtccgtggtgcatgtggcctgcggctcgatcgagtacggctttgtggac
cccggcctcaagctggccgtgctgaccgagaccgacctgtccgggcagaaggcggcgggc
aaggacggcgcccggatgccggcccggcggcgcaagacgatcgatccgctgagccttcag
gcgggcgatttcatcgtccatgagcagcacggcgtcggccgctatatcgagatggtgcag
cgcacggtccagggcgccacccgcgagtacctggtcgtggagtacgcgcccgccaagcgt
ggccagcccggcgaccggctgttcgtaccgacggaccagctggagcagatcaccaagtac
gtgggcggcgaggccccgaccctgcaccggctcggcggggcggactggaccaagaccaag
gcgcgggcgaagaaggccgtcaaggagatcgcggccgacctgatcaagctctactcggcc
cgtatggccgcgcccggccatgccttcggcgcggacaccccctggcagcgcgagctggag
gacgccttcccgtacgcggagaccccggaccagctgacgaccatcggcgaggtcaaggag
gacatggagaagtcggttccgatggaccggctgatctgcggcgacgtcggttacggcaag
accgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggtaagcaggtcgctgtg
ctggtgccgacgacgctgctggtgcagcagcactacggcaccttcacggagcgttacggc
cagttccccgtggtcgtgaaggcgctgtcccgcttccagacggacacggaggcgagggcg
gttctggaggggctgcgggacggcgcggtggacatcgtcatcggcacccaccgcctcttc
tcctccgagaccaagttcaaggacctgggcctggtcgtcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgggcgaacgtggacgtgctgaccatg
tccgccacccccattccgcgcaccctggagatggcggtcaccggcatccgtgagatgtcc
acgatcacgaccccgccggaggagcgccacccggtgctcaccttcgtcggcccgtacgag
gagaggcagatcggcgcggccatccggcgtgagctgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgggcggctgcgcggctgcgcgagatcgtcccc
gaggcgcggatcgccaccgcccacggccagatgtcggagaacgtgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgatgtgctcgtctcgacgacgatcgtcgagtccggt
atcgacatctccaacgccaacacgctgatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgtggccgcgtcggccgtgggcgcgagcgcggatacgcgtacttc
ctgtacccgccggagaagcccctgaccgagacggcccatgagcggctggccaccatcgcc
cagcacaccgagatgggcgcgggcatgtatgtggcgatgaaggacctggagatccgcggc
gcgggcaatctgctcggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacgtacggatggtgggcgaggccgtcgccgactaccgggcctcgctggaggcgggcggg
gagccggaggaggccccgctggaggtcaagatcgagctgccggtggacgcgcatgtcccg
cacgactacgcaccgggggagcggctgcggctgcaggcctaccgggccatcgcctcggcg
tccaacgaggaggacatccgccacgtccgcgaggagctgaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctacggcaagctgccggagccggtggagaacctgct
gctggtcgcggggctgcggctgctggcgcgggcctgcggggtcggcgacatcacgctcca
gggctccaacatccgcttcgggccggtcgagctgcgcgaatcgcaggagctgcggctggg
gcggctctacccgaggtccgtggtcaagcctgccaccaagcaggtgctggtgccccggcc
ggcgacggccaggatcggcgggaagccgctggtggggcgggatctgctggcgtggacagg
ggagttcctgaccacgatcctgggggcgtagccgggaggcctcgggtttgcggtggttat
tag
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integrated database retrieval system
