Shewanella baltica OS185: Shew185_0707
Help
Entry
Shew185_0707 CDS
T00571
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbm
Shewanella baltica OS185
Pathway
sbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shew185_0707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbm03019
]
Shew185_0707
03016 Transfer RNA biogenesis [BR:
sbm03016
]
Shew185_0707
Enzymes [BR:
sbm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Shew185_0707
Messenger RNA biogenesis [BR:
sbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shew185_0707
Transfer RNA biogenesis [BR:
sbm03016
]
Prokaryotic type
tRNA degradation factors
Shew185_0707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ABS06864
LinkDB
All DBs
Position
847791..850214
Genome browser
AA seq
807 aa
AA seq
DB search
MIKDPHFEREQDKYENPIPSREYIIDYLRSQKSPITRDSIAAALNIQEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLIPGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTDADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGDV
LYRVHEAPSEQKLANFKEFLAERGLTMPGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLVMLGDDGKGGKRKASASRDKPMTARERVNREGAKQGKAGKTATPSTKAEAGKAKPKAK
AGTKAKKTAVKDPAKKPKAAKRSTRKK
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgattacttacgttctcagaaatcacctatcactcgtgacagtatt
gccgcggcgttaaacatccaagaggaagaacagcttgaggccctgcgccgtcgcctacgt
gcgatggaacgcgatggcgaacttgtgttcacccgtgggcagagctatggcttgcccgag
aaaatggatcttatccccggcactgtactcggacacagagaaggcttcggctttttcaaa
cccgatgaaggcggtgatgacttatttatttcgaaccgcgatatgctgatgtatttccac
ggtgataaagtgctggcgcaaaaagcgggcacagatcgtcgtggtcgccgcgaagcgcgt
ttggtgcgtttgatccagccgcgcagtgccgcgattgttggccgttatcatgttgatagc
ggtatggcatttgtcattgccgatgataagcgtattacccaagaaatcttagtcgcgaat
gaagatcgcaacggcgcccgtcaaggcgatgtggttgtggttgaattaacgcgtcgccca
ggtcgttttgttaaggctgcgggtaaagtgactgaagtgcttggtaagcaaatggcgccg
gggatggaaatcgaaatcgccctgcgtaactacgacttaccccatacttggtcaccagtg
atcgagaagaaactgcgccgaattcccgatgaagtgaccgacgccgataaagtcggccgt
gtggatttacgtcatctgccattagtgactatcgacggcgaagacgcccgcgattttgac
gatgccgtgtatgcggagaaaaaagccggtggcggctggcgtttatgggttgcgattgct
gacgttagttattatgttcgcaccgattcggctttagatactgaagcgcgtgcccgtggt
aactcagtgtatttcccatcacaagtgatccctatgctgccggagaaaatctccaacggc
ctatgttcgcttaatcctcacgtcgaccgtttatgtatggtcgctgagatgacagtgtct
gccaaaggcaagttgtcgggttataagttttatccagcggtgatgtattcccatgcccgt
ttcacttatacccaagtggcggagatgttagaaggtggcccgattgcgccagagcatgaa
gccttgttcccgcatctgcagtgtttacagtcattgtatttagcgctagatgagcaaaga
gctgagcgcggtgcaattgcgtttgaaaccatggaaacgcagttcattttcaatgagcag
cgcaagattgataaaatcgtgccgcgtggccgtaatcaagcacataaaatcattgaagaa
tgcatgattttagccaacgtttctgcagctaaatttgtgaagaaacacaaaggcgacgtg
ctgtaccgagtgcatgaagcgccatctgagcaaaagttggcgaactttaaagagttcctt
gctgagcgtggtttgactatgcctggcggacttgagccaacgccgtcagattaccagaac
gtgatgctgcaaattgccgaccgtcccgatgctgaacttatccaagtgatgttactgcgt
tctatgcgtcaggccatttacaccccagataatgaaggtcacttcggtctagccttagaa
gaatatgcgcattttacctcgcccattcgccgttatccggatttagtcttacatagagtt
atccgttatttactggcgaaggaaagaggcgaagccacagaaaagtggacgcaggatggt
ggctaccactatcaactcgatgaactcgaccaattgggcgaagagtgttcgactacggag
cgtcgtgccgatgaagcgactcgtgatgttagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggcgataccttcgaagctgtgattgcctcagtgacgagctttggtttgttt
gtgcgcttaaatgagctgtttatcgatggcttagtgcatatctcaagcctaggcagtgat
tactaccaattcgatcctatgcgtcaacgccttatcggtgagcatacaggccaagtctat
caagtgggcgatcctgtgacggttaaggtcgctgcagttaacttagatgacagacagatt
gatttagtcatgctgggtgatgacggcaaaggtggtaagcgtaaagcatctgccagccgt
gataagccgatgactgcccgtgagcgtgttaatcgcgaaggtgctaagcaaggcaaagcg
ggtaaaaccgcaacgcctagcactaaggctgaagctggcaaagccaaacctaaggctaaa
gcgggcactaaagcgaaaaaaacagcagtaaaagatccggctaaaaagccaaaagccgct
aagcggagcacgagaaagaaataa
DBGET
integrated database retrieval system
