Shewanella baltica OS117: Sbal117_0941
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Entry
Sbal117_0941 CDS
T02013
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbs
Shewanella baltica OS117
Pathway
sbs03410
Base excision repair
sbs03430
Mismatch repair
sbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sbal117_0941
03430 Mismatch repair
Sbal117_0941
03440 Homologous recombination
Sbal117_0941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbs03400
]
Sbal117_0941
DNA repair and recombination proteins [BR:
sbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sbal117_0941
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sbal117_0941
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sbal117_0941
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Kbp-5
Motif
Other DBs
NCBI-ProteinID:
AEH12720
UniProt:
A0A7U4E087
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All DBs
Position
1057180..1058904
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AA seq
574 aa
AA seq
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MIHKIVRRPTVDDSHLPAHLSPLLKQLYARRGALTHECELVLKGLLRPETMKGLPEAAAL
IADAMQANKSILIVGDFDADGATSTSVCMLALRMMGAVKVDYLIPNRFDYGYGLSPEIVA
VAASKQAEMLITVDNGISSIDGVAAAKAFGMQVVITDHHLPGHELPAADAIVNPNQPDCP
FASKSIAGVGVAFYLMTALRAELRTRNWYQTRGIAEPNLGTLLDIVALGTVADVVSLDAN
NRILVEAGLQRVRAGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCEDMMYARRMAAELDGLNQERRELEVGMQQEALKSLEHLKLNEDELPWGIALFQE
DWHQGVIGILASRIKDKYHRPVIAFADAGNGQIKGSARSIKGLHMRDLLELVNTRHPGLI
IKFGGHAMAAGLSLKAGSFATFAKAYDDAVRELLKPELLTGELWSDGELTPTELNLEMAQ
LLRNAGPWGQAFEEPLFDGYFTIVQQRLVGERHLKLVLETQCGTVMLDAIAFNVDLHTWP
DATIHHARIVYKLDVNEYRGNFTLQLMVEQIEAM
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
ttgatccataagatagtccgtcgcccaaccgttgatgatagccatttacccgctcatctt
tcgccgctattgaagcagctttacgctcgccgcggtgcgctcacccacgaatgcgaactt
gtcctcaagggtctattaagacctgaaaccatgaaaggcctgcccgaagctgcggcgctt
attgccgatgccatgcaggcgaataagtcgattttgatcgtcggtgattttgatgccgat
ggcgcgacctcaaccagcgtatgtatgctggcgctacggatgatgggcgcagttaaagtg
gattatttgatccccaatcgcttcgattacggctacggcttaagccctgaaattgttgcg
gttgcggcgtctaaacaggctgaaatgctgatcactgtcgataacggtatttcatcgatt
gatggcgttgctgcggccaaagcctttggtatgcaagtggtgattactgaccatcattta
cccggacacgagttgcctgctgctgatgcgatagtgaatccgaatcaacccgattgcccc
tttgcgagtaaatcgattgccggtgtcggtgtcgccttttatttgatgacggcattaagg
gctgaactgcgaacgcgaaactggtatcaaacgcgcggtattgctgagcctaatctaggg
acgctgctcgacattgttgccctaggtaccgttgccgatgtggtatcactcgatgccaat
aatcgcattttagtcgaagcgggtttgcagcgcgtgcgagcgggccgctgccgtgtgggc
attaccgcgctgcttgaagtcgcgaaacgcaaccccgcgcgtattgttgcatctgatttt
ggttttgccgtgggcccaaggcttaatgccgcaggccggctggatgaaatggcgcttggg
gtcgaaaccttactctgtgaagacatgatgtacgcgcggcgtatggcggccgagctcgat
gggttaaaccaagagcgtcgtgagctggaagtcggcatgcagcaggaagccttaaaaagc
cttgagcacttaaagctcaacgaagacgagttaccttggggtatcgcgctatttcaagaa
gattggcaccaaggcgtcattggtattttggcctcgcgcattaaagacaaataccacaga
cccgtgatcgcctttgccgatgcgggcaatggtcaaattaaaggctcggcgcgttcaatc
aaaggcttgcatatgcgcgacttgctggagctggtcaacacgcgccacccaggattgatt
atcaagtttggtggccatgcgatggcggcgggcttatcactcaaagccggtagttttgcg
acatttgccaaagcctatgatgatgcggtgcgtgaactgctcaaacctgaactgctaact
ggcgagctgtggtccgatggtgaactcactcccactgaactgaatcttgagatggcccag
ttactgcgcaatgctgggccttggggacaagcctttgaagagccactgtttgatggctat
tttacgatagtgcagcaacgcctcgtcggcgagcgccatcttaagcttgtactcgaaacc
cagtgcggcactgtgatgctcgatgcgattgcttttaatgtggatttacacacttggccc
gatgcgaccattcaccatgctcgtatcgtttataagcttgatgtgaatgagtatcgaggt
aatttcaccttgcaactcatggttgagcagattgaagccatgtag
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