Shewanella baltica OS678: Sbal678_0588
Help
Entry
Sbal678_0588 CDS
T01725
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbt
Shewanella baltica OS678
Pathway
sbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sbal678_0588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbt03019
]
Sbal678_0588
03009 Ribosome biogenesis [BR:
sbt03009
]
Sbal678_0588
Enzymes [BR:
sbt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sbal678_0588
Messenger RNA biogenesis [BR:
sbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sbal678_0588
Ribosome biogenesis [BR:
sbt03009
]
Prokaryotic type
rRNA helicases
Sbal678_0588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ADT92785
LinkDB
All DBs
Position
complement(662334..664256)
Genome browser
AA seq
640 aa
AA seq
DB search
MSSDERTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNKVTSQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNA
LKRGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEMLKMGFIDDIEWILEHTPSER
QLALFSATMPEQIKRVANQHLRNPVHVRIESSQTTVESIEQRFVQVSQHNKLEALVRVLE
VENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIA
TDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE
RSTNSRISPMKIPSPETVAERRLSRLGEQLAETINGDLDFMKEAVAQLCQQLEVDTDLLA
AALLQQVQQERPLQLPAIQERARDERSERAERSDRGSDRGDRGGERGERRSREPRPMPAS
LGSAEALKDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDAVTTV
DLPDGMPKDVLQHLRKVRVCGKPLNIREAGDQVFVDSGRSARSDRPAGDRKPRGDRPTGD
RPAGDRKPRAASTGDKPFADRKPRADKPAGERKPRKPRED
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgatgaaagaactttccgtgaactcggcctatccgagaatttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaatccaatcagccagtattgatccactt
atggctggcaaagatattttaggtcaagcgcaaacaggtacaggtaaaactggcgccttc
gctttaccactattaaacaaagttaccagccaaactacaccgcaaattttagtcttagca
ccaacacgtgaattagccgtgcaggttgctgaagcgttcagtagctatgccaaatttatg
aagaatttccacgttcttcctatctatggcggccaaagcatgcaacaacagttgaatgcc
ctgaaacgcggcccacaagttatcgttggtacgccaggtcgtgttatggaccatatgcgt
cgcggcaccttgaaactcgactcattacaagctttagtgcttgatgaagccgatgaaatg
ttaaaaatgggcttcatcgatgatatcgaatggatccttgagcacacgccaagcgagcgc
caactggcgttattctctgccactatgccagagcaaattaagcgtgtagctaaccagcac
ttacgtaatcctgtacatgttcgtatcgaatcaagccaaacgacggttgagtcaatcgaa
cagcgtttcgtacaagtatcacaacacaacaaacttgaagctttagtacgtgtattagaa
gttgaaaacactgaaggtgtgatcatattcgtacgtactcgtaactcatgtgttgagtta
gctgaaaagttagaagcccgcggttacgcttcatcaccactacacggtgacatgaaccag
caagcccgtgagcgtgcagttgaccaactgaaacgtggcaagttagacatactgatcgcg
actgacgttgctgcccgtggtcttgacgttgagcgtatcggtcacgttgtaaactacgat
attccgtatgatgccgaagcttatgtacaccgtattggccgtacaggccgtgctggccgt
actggtatggcgatcctgtttgtaactagccgtgaaatgcgcatgctgcgcactatcgag
cgttcaactaacagccgcatttcaccaatgaaaatcccaagcccagagactgttgcagaa
cgtcgtctgtctcgcttaggtgagcaattggctgagacgatcaacggcgatttagatttc
atgaaagaagctgttgctcaattatgccaacagttagaagtcgatactgatctgctagcc
gctgcattattacagcaagttcaacaagaacgtcctttgcaattgccagcaattcaagaa
cgtgctcgtgatgaacgcagtgaacgtgctgaacgtagcgaccgcggaagtgatcgtggc
gaccgtggtggtgagcgtggtgaacgcagaagtcgcgaaccgcgtccaatgccagcaagc
ttaggttcagctgaagcgttgaaagacaacccagatttgaaaatgtgccgttacgtgatc
gacgtaggtcgtgagaatggtgtaggtgtgggtaacatcgttggcgctatcgcgaacgaa
gctaacatcgacagccgttacattggcgcaatccaactttacgatgcagtgaccactgtt
gacctgccagacggcatgccaaaagacgtgttacagcacctacgtaaagtacgtgtttgt
ggcaagccattgaacatccgcgaagctggcgatcaagtatttgttgattcaggccgtagt
gctcgttcagaccgccctgctggtgaccgtaaaccacgtggtgatcgtccaacgggtgac
cgcccagctggtgaccgtaagccacgcgctgcgtctactggtgacaagccatttgctgac
cgcaaaccacgtgcagacaagcctgccggtgagcgtaagccacgtaaaccacgtgaagac
taa
DBGET
integrated database retrieval system
