Salmonella bongori N268-08: A464_3362
Help
Entry
A464_3362 CDS
T02733
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbz
Salmonella bongori N268-08
Pathway
sbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A464_3362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbz03019
]
A464_3362
03009 Ribosome biogenesis [BR:
sbz03009
]
A464_3362
Enzymes [BR:
sbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A464_3362
Messenger RNA biogenesis [BR:
sbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A464_3362
Ribosome biogenesis [BR:
sbz03009
]
Prokaryotic type
rRNA helicases
A464_3362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AGR60546
UniProt:
S5MVA3
LinkDB
All DBs
Position
complement(3332293..3334185)
Genome browser
AA seq
630 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTAEGEELD
LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGD
GRRFSGERREGSRGPRREEGASRRRFGSDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtgctgggtatggcccagaccggtagcggcaaaaccgcagcgttt
tctttaccgctgctcaacaatctcgatcctgagctgaaagcaccacagattctggtgctg
gcgccgacccgcgaactggcggttcaggtcgctgaagcgatgacggatttctctaaacat
atgcgcggcgtaaacgtggttgccttgtacggtggccagcgttatgacgtgcagttacgc
gccctgcgtcaggggccgcagatcgtcgtcggtacgccgggacgtttgctggaccacctg
aagcgtggcactctggacctctctaaactgagtggcctggtgctggatgaagccgacgaa
atgttgcgtatgggcttcattgaagacgttgaaactattatggcgcagatcccggagggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgaccacccgtcctgacatc
agccagagctactggacggtgtggggaatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgataattttcgtgcgtaccaaaaacgcgactctggaa
gtggcggaagcgctggagcgtaacggctataacagtgccgcgttgaacggcgacatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggccgcctggatatcctgatt
gccaccgacgttgcggcccgtggcctcgacgttgaacgcattagcctggtggtgaactac
gatatcccgatggactctgagtcctacgttcaccgtattggccgtactggtcgcgcgggt
cgcgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagttgaactgccgaatgcggaactgctgggc
aagcgtcgtctggaaaaattcgccgcaaaagttcagcagcagttggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgaccgccgaaggcgaagaactggac
cttgaaacgctggctgccgcgctgctgaaaatggcgcagggcgaacgtccgctgatcctg
ccgccagacgcgccgatgcgtccgaagcgcgaattccgtgatcgtgatgatcgtggcccg
cgcgatcgtaacgatcgtggtccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgc
cgtgatgttggcgatatgcagttgtaccgcatcgaagtgggccgtgatgacggcgtagaa
gtacgccatatcgttggtgcgattgctaacgaaggtgatatcagcagccgctacattggt
aatattaagctgtttgcttctcactccaccattgaactgccgaaaggtatgccaggtgaa
gtactgcagcactttacgcgtactcgcattctgaacaaaccgatgaatatgcaactgctg
ggcgatgcacagccgcataccggtggtgagcgtcgtggtggtggtcgtggttttggtggc
gagcgtcgtgaaggcggtcgtaattttagcggtgaacgtcgtgaaggtggccgtggtgat
ggccgtcgtttcagcggcgagcgtcgtgaaggtagccgtggtcctcgtcgtgaagaaggt
gccagccgtcgtcgtttcggtagcgatgcctaa
DBGET
integrated database retrieval system
