Gracilinema caldarium: Spica_0086
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Entry
Spica_0086 CDS
T01573
Name
(GenBank) alpha amylase catalytic region
KO
K01176
alpha-amylase [EC:
3.2.1.1
]
Organism
scd
Gracilinema caldarium
Pathway
scd00500
Starch and sucrose metabolism
scd01100
Metabolic pathways
scd01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
Spica_0086
Enzymes [BR:
scd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.1 alpha-amylase
Spica_0086
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Gene cluster
GFIT
Motif
Pfam:
Alpha-amylase
hDGE_amylase
DUF5696
Malt_amylase_C
DUF3459
Motif
Other DBs
NCBI-ProteinID:
AEJ18257
UniProt:
F8EY98
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Position
105987..107696
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AA seq
569 aa
AA seq
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MNLLVLGLLSMIISWIRPAVLEAQDLPWWKDASGPAYQVLVYSFADSDGNGYGDLKGLTQ
ALDYLNDGNPATYSDLNISAIWLSPVNPASSYHGYDVKDYKAIDPKLGTMEDFDTLIREA
HKRGIKIIMDMVFNHTSREHPWFLEAMKSASSPYVNYYRTKQNGVSYGASGMGRFYKYTR
PDGSVFEYFSAFWEGMPDLNLDNTDVVNELKDILAFWLNRGVDGFRFDAAKHAFDPNEMP
SGTPTLALNKTFWNDLRRSARRVKPDVYFIGEVLTENLAEVTAYTGVFDGLFDFPSARQV
IDAVRRMSGTGFIQAYQNIYSQYSRISAFQSAPLLSNHDQDRYISSLLTSMSLDAVKGLQ
VEAGDTEVVRSAKAFALTKAKMAASIYQTLPGLPYIYYGEELGMTGRRYKNDDVARRDAF
KWNDTGTLPTVTWLQKSNKLEPSQNSLTASAESQMKDPGSLLRHYQSLAALRQNSSALRQ
GTFAAPSWPGFNSGYLLAWLRESDTQRVLVLHNLDSLPFVAKVPEGVRFVALWNSQQGFL
DEKSRPSLQSGVELRLEPAQSAVYEVLNP
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttagttctaggtctcctatcaatgattatttcctggatcaggccagcagtg
cttgaagctcaggacctcccttggtggaaggatgcttctggccctgcatatcaggtactg
gtgtattcctttgccgattcggatggaaacgggtatggagacctgaagggtcttactcag
gcgctggattatttgaatgatgggaatccggctacctattcggatttgaacatttcggcc
atctggctttcgccggttaatccggccagttcataccatgggtatgatgtaaaggattat
aaggcgatagaccccaaactgggaacgatggaagactttgataccctgattagagaagcc
cataagcggggtattaagatcattatggacatggtatttaatcatacttcccgggaacat
ccctggttcctggaggcgatgaagtccgcctccagtccctatgtaaactactaccggacc
aaacaaaacggcgtttcctatggggcaagcggaatgggccgcttttacaaatatacccgg
cccgatggatctgtgtttgaatacttttccgccttctgggagggtatgccggatctgaac
ctggataataccgatgtggtcaatgaactaaaggatatcctcgccttctggctgaaccgc
ggggtcgatggcttccgctttgatgcggctaaacatgcctttgacccgaacgaaatgccc
tcagggactccaaccctggctttgaataaaaccttctggaatgacctccggcgctctgcc
cggcgggtaaaaccggatgtctactttattggcgaggtgctcacggaaaatctggccgaa
gtgacagcctacaccggtgtgttcgatggcctctttgattttccctccgcacggcaggtc
attgatgcggtccggcggatgagtggaaccggttttattcaggcttatcagaacatttac
agccaatacagccgaatatcggcttttcagagtgctccccttttatctaaccatgaccag
gaccggtacatcagttctcttttaacgagtatgagtctggatgcagttaagggcctccag
gtggaagccggtgatacagaagtggtgcggagtgccaaagcctttgcattaaccaaggca
aaaatggcagcctccatctatcagaccctgccgggactcccttatatctactacggcgaa
gagctggggatgaccgggcggcgttataaaaatgatgatgtggcccgccgggatgccttt
aagtggaatgatacagggaccctgcccacggtaacctggctgcaaaaaagcaataaatta
gaaccgagccagaacagcctgaccgcctcagcagaaagccagatgaaggacccggggagt
cttttgcggcattatcaaagtttggcagctctgcgccagaacagctcggccctcaggcag
gggacctttgcggcgccctcctggccgggctttaattcggggtacctgcttgcctggctc
agggaaagcgacacccagcgggtgctggtactgcataacctggacagtttaccctttgtc
gctaaggtccctgaaggggtccgctttgtagccctctggaatagccagcagggcttcctg
gatgaaaagtcccgcccaagtttacaaagcggcgtagaactcaggctggaaccagcccaa
tcggcggtatacgaagtgctgaatccttag
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