Sphingobium chlorophenolicum: Sphch_1247
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Entry
Sphch_1247 CDS
T01522
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sphch_1247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sch03019
]
Sphch_1247
03016 Transfer RNA biogenesis [BR:
sch03016
]
Sphch_1247
Enzymes [BR:
sch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Sphch_1247
Messenger RNA biogenesis [BR:
sch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Sphch_1247
Transfer RNA biogenesis [BR:
sch03016
]
Prokaryotic type
tRNA degradation factors
Sphch_1247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
BioW
Motif
Other DBs
NCBI-ProteinID:
AEG48936
UniProt:
F6EW57
LinkDB
All DBs
Position
1:complement(1349104..1351449)
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AA seq
781 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGSAVMMVESEAKELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLE
DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIEAIVGFLPRTHGSALFTRGETQSICTTTLGTK
DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKAKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDTAQIEAAKKWILGIVEEAEVGKIYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREPREPRGDRGDR
GDRGRGPRRDGGDRGGRGGDRGGDRGPRRDRGGDRGPRGEGGRGGDDDGGNAGLPDFLTQ
D
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaggtatcaatcgagctgggcggaaagaccctcacgctcgaaacc
ggccgcattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgaaaccgtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaaggacaggacttcttcccgctgacc
gtccactatcaggaaaaatattcggccgccggtcgcattccgggcggcttcttcaagcgt
gagcgtggcgccacggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgt
ccgctgttccccgaaggtttctataacgaaatcaacgtcatcgcccaggttctgagcttc
gacggcgaaagcgagcctgacatcgtggcgatgatcgccgcctcggccgcgctgacgctt
tccggcgttcccttcctcggccccatcggcgccgcccgcgtcggttacaaggatggcgaa
tatcagctcaacccgtcgttggacgaagtgaagaccggcgaactggacctggtcgtcgcc
gccaccggcagcgccgtgatgatggtcgaatccgaggccaaggaactgtcggaagacgtc
atgctcggcgccgttctgttcgcgcatgaagcgtcgaagaagatcgtcaacgcgatcatc
gatctcgctgaaaaggccgcgaaggatccgtgggacgtcgccaagggcgacgatctggaa
gatctgaagaagaagctcaagaagctgatcggcaaggacatcaccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctgaacgaagcccgcgccaaggcgaaggcccag
ttcgtggccgatggcctggacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaagcggaaatcgttcgcggcgccatcctgaaggacggcaagcgcatcgacggccgc
accaccacgcagatccgtccgatcgaggcgatcgtcggcttcctgccgcgcacccatggt
tcggcgctgttcacccgtggcgaaacgcagtccatctgcaccaccacgctgggcaccaag
gacgccgagcagatgatcgacggcctgaacggcgtctattatgaaaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctggcatggcgcgccctgcacccggtcctgcccagcaaggac
gagttcccctacaccatccgcgtgctgagcgacatcaccgagtccaacggctcgtcctcg
atggcgacggtctgcggcggttcgctgtccatgatggacgcgggcgttccgctgaagcgt
ccggtgtcgggcatcgccatgggcctgatcctggaaggcaagaatttcgctgtcctcagc
gacattctgggcgacgaggatcacctcggcgacatggatttcaaggtggcgggcacggaa
gcgggcatcaccacgatgcagatggacatcaaggtcgccggcatcacgcaggaaatcttc
gaagtcgcgctgcgccaggcgaaggaaggccgcgcccacatcctgggtgagatgagcaag
gccctgtcctcgacccgcaccgagctgtcggcgcacgctccgcgcatcgagacgatccag
atcgacaaggcgaagatccgcgacgtcatcggcaccggaggcaaggtcatccgcgaaatc
gtcgcggaaaccggcgcgaaggtcgacatcgacgacgaaggcatcatcaagatcagctcg
tccgacaccgcccagatcgaagccgccaagaagtggattctcggcatcgtcgaggaagcg
gaagtcggcaagatctacaccggcaaggtcgtcaacatcgtcgatttcggcgcgttcgtg
aacttcatgggcggcaaggacggtctcgtccacgtctccgaaatgaagaatgagcgcgtg
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctcgaaatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgaggaa
ctggaggacacccgtcctccgcgcgaaccccgcgagcctcgcggcgaccgcggtgatcgt
ggcgaccgtggccgcggcccgcgccgtgacggcggcgaccgtggcggacgcggtggcgac
cgtggcggcgatcgcggcccgcgtcgcgaccgtggcggtgaccgtggcccgcgcggcgaa
ggcggccgtggcggcgatgacgacggcggcaacgccggtctgcccgatttcctgacccag
gactga
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