Sphingobium chlorophenolicum: Sphch_1681
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Entry
Sphch_1681 CDS
T01522
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sch
Sphingobium chlorophenolicum
Pathway
sch03030
DNA replication
sch03410
Base excision repair
sch03420
Nucleotide excision repair
sch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sphch_1681
03410 Base excision repair
Sphch_1681
03420 Nucleotide excision repair
Sphch_1681
03440 Homologous recombination
Sphch_1681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sch03032
]
Sphch_1681
03400 DNA repair and recombination proteins [BR:
sch03400
]
Sphch_1681
Enzymes [BR:
sch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sphch_1681
DNA replication proteins [BR:
sch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sphch_1681
DNA repair and recombination proteins [BR:
sch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Sphch_1681
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sphch_1681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DprA_N
Ribosomal_60s
HHH_5
IMS_HHH
HHH_2
HHH
HAMP_N3
Motif
Other DBs
NCBI-ProteinID:
AEG49369
UniProt:
F6F005
LinkDB
All DBs
Position
1:1793925..1796711
Genome browser
AA seq
928 aa
AA seq
DB search
MPQNHLYLVDGSGYIFRAYHQLPPLTNKHGQPVGAVYGYTTMLWKLADELGKAEGPTHLA
VVLDKGSHTFRNEMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIA
SYTKAAIAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMNKFGVQPEQLGDV
LALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIAHADMARL
SRRLVALHDAMDLPEPLDDLTLKGIPLEPLQQFLEHHGFKSLLARAGAPAAAVAIATAAA
AVSEATPPAAPVHEEEPPIDRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSC
ALVGVSLAVGPNAACYVPVGHGGKDMFAEKPDQLPLALVLAKLKPLLEDDSVLKIGQNLK
YDITVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVCGTGK
SQISFAEVPLDKATEYAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEH
EGIKVDREALSRLSAEFTAGIAALETEIHGLAGQPFAIGSTQQLGAILFDKMGYKGGKKG
KSGAYSTDVTILEQLKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSL
SGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVP
ALKEAFANGEDIHAATAQQLFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQ
DMISRYYERFPGISLYITDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAIN
APIQGTSADIIKRAMARMGPALAAEGLHDVKMLLQVHDELVFELPEGDVEQASAVIRRVM
EGAAEPIVKLSVPLGVEIGHGPSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagaatcacctctacctcgtcgacggcagcggctatatcttccgcgcctatcac
cagcttccgccgctcaccaacaaacatgggcagcccgtcggcgcggtctatggctacacc
accatgctctggaagctggccgacgaactgggcaaagccgaaggccccacccatctcgcc
gtggtgctggacaagggcagccacaccttccgcaacgagatgtacgacgcctacaaggcg
aaccgcccgccgccgccggaggatctggttccccaatttccgatgatccgcgacgccacc
cgtgccttctcgctcccctgcatcgaggaagcgggtttcgaggccgacgacatcatcgcc
agttacaccaaggccgccatcgcgcagggctggcacgtcaccatcgtcagttccgacaag
gatctgatgcagctcatccagcccggcgtcgacatgtacgacacgatgaagaatgagcgg
cgcggtgccgactatgtgatgaacaagttcggcgtgcagcccgaacaactgggcgacgtg
ctggccctgatgggcgacagcgtcgacaatgtccccggcatacccggcatcggccccaag
accgccgccaagctgatcaccgaatatggcgggctggaagcggcgctggaggccgcgcct
tcgatgaagaagtcgaagatgcaggagaatctgatcgcccatgccgacatggcccgcctg
tcgcgcaggctggtggcgctgcatgacgcgatggacctgccggaaccgctggacgacctg
accctgaagggcattccgctcgaaccgctccagcagttcctcgaacatcacggcttcaaa
tcgctgctggcccgcgcgggcgcgcccgccgcagcggtagccatcgcaaccgcagccgcc
gccgtcagcgaggccacgccccccgccgccccggtccatgaggaagagccgcccatcgac
cgcagcctctacgaaacggtggtgacggaggaggcgctggaccgctggatcgccgccgcc
catgcagaggggctggtggcggtcgataccgaaacggacatgctggactgcgtgtcctgc
gcgctggtgggcgtcagcctggccgtcgggccgaacgccgcctgctacgtgcccgtaggc
catggcgggaaggacatgttcgcggagaagcctgaccagcttcccctcgcactggtcctc
gccaagctgaaaccgctgctggaggacgacagcgtcctcaagatcggccagaacctcaaa
tatgacatcacggtcctgcgtcggcacggtatagagatcgcgccctatgatgacaccatc
gtcatgagcttcgacctcgacgcggggcagagcctggcgggccacggcatggacgaggcg
gcgaaaacccacctcaatcacatctgcatcagcttcaaggatgtctgcggcaccggcaag
agccagatcagcttcgccgaagtcccgctcgacaaggcgaccgaatatgccgccgaggat
gcggacgtcacgctgcgcctgtggaaattgttcaagacccgcatcgccaacgaaggcgcg
acccgcgtctacgaactggtcgaccgtccgctcgtctcggtcatcgcgaagatggagcat
gagggcatcaaggtcgaccgcgaagccctttcccgcctctccgcagagttcacggcgggg
atcgccgcgctggaaacggaaatccacggccttgcgggccagcccttcgccatcggctcc
acccagcagcttggcgcgatcctgttcgacaaaatgggctataagggcggcaagaagggc
aagtccggcgcctattccacggacgtcaccatccttgagcaattgaaggtgcagggggct
gaaatcgctggcaaggtgctggactggcggcagctatcgaagcttaaatccacctatacc
gacgcgcttcaggcccagatcaacagggacaccagccgcgtccataccagctacagcctg
tccggcgcgcagaccggccgcctgtcatcgaccgaccccaatctccagaatatcccgatc
cgcaccgaagtgggccgccagatccgccacgccttcgtcgcggagcctggcaatgtcatc
ctggcggcggactatagccagatcgaactgcgcctggctgcacatatggcggacgttccg
gcactgaaagaggcattcgccaatggcgaggacatccacgccgccaccgcccagcaattg
ttcggggaggtcaaccgcgacacgagaggccgggccaagacgatcaacttcgcgatcctc
tacggcatcagccgctggggcctggccggacggctggagatcagcgccgacgaagcgcag
gacatgatcagccgctattatgagcgcttccccggcatcagcctctacatcaccgacacc
atcgaaaaggcgcggtcgaagggctatacggagacgctgttcgggcggaagacgtggttc
ccgcgcatcaaggcatccgtccagcatgaacgccagggcgcagagcgcgccgcgatcaac
gccccgattcagggcaccagcgccgacatcatcaagcgcgccatggcccgcatgggaccg
gcgctggcggcggaagggctgcatgacgtaaaaatgctgctgcaggtgcatgacgaactg
gtgttcgaactgccggagggtgacgtggagcaggccagcgccgtcatccgccgcgtgatg
gaaggcgccgccgagccgatcgtgaagctgagcgtgccgctgggggtggagatcggccac
ggcccaagctggggcgcggcgcactag
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