KEGG   Sphingobium chlorophenolicum: Sphch_2999Help
Entry
Sphch_2999        CDS       T01522                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sch  Sphingobium chlorophenolicum
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sch00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Sphch_2999
Enzymes [BR:sch01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Sphch_2999
DNA repair and recombination proteins [BR:sch03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Sphch_2999
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
2:complement(96623..99130)
Genome map
AA seq 835 aa AA seqDB search
MAADPLAPYNAKRDFRRTREPAGKVAKKGGNSFVVQKHAATRLHWDFRLEIDGVLKSWAV
TKGPSLDPADKRLAVRTEDHPIDYGSFEGNIPKGEYGGGTVMLWDRGSWEPVPGKSADDL
KDGHLHFILHGERMKGEWLLVRMKGRPGEKRENWLLRKIDDGEAGKGDMLVERALTSVLT
DRSMAQIEADAEATQSLKGSGKRAFSDKMRAAEVHNAKVRSKAGRKTGGGALPRFVKPQL
ATLVDSVPAGNDWLHEIKYDGYRMLIAVDGAKVKLFTRNGLDWTDKFGPLAESIAALDLP
SALIDGEVVALGEDGNPSFSALQAVLKRGHGAQRADTPFHLFAFDLLFLDGMDLRPLPTI
ERKERLEALLHDSQPPVHVADHLIGAGEKLYRSLCDAGQEGIIAKRIDAPYRGDRTRNWV
KVKCVRRQEFVLVGWTKSKAKGRPFSSLLLAQNEGGAMVYKGKVGTGFDAAAMEELAGAM
APLAVDKAPLEVPRAEARGVQWIKPRLVAEVAFAEFTGDGRVRHGTFLGLRSDKPAKAVQ
PERAEPAPLPQNGVTISNRERIIFPEDGLTKGDLADYYARVAPLMLPFAANRPISLVRCP
QGRAKKCFFQKHDSGSFGDHVRQVPIREKDEGWEDYIYVEDADGLMACVQMGTIEFHGWE
SRADAVEKPDRMIFDLDPDEGMDFAKVRQAARDIRDRLSDIGLVSFAMLSGGKGVHVVAP
LTPGHDWDAHKDFASRFAQALSAAEPDRFVATMSKAKRKGRIFIDWLRNQRGSTAVLPYS
VRARPGAPVAVPIDWDELGGMKDAHPFGIRDAEKLLRRSRELNGWGFAAQGLPGL
NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt
atggcggccgacccactggccccctataacgccaagcgcgatttccggcgcacccgcgaa
ccggcgggcaaggtcgcgaagaagggcggcaacagcttcgtcgtccagaaacatgcggcg
acgcggctgcattgggatttccggctggagattgatggggttctgaagagttgggcggtg
accaaggggccgagcctggatcccgccgacaagcggctggccgtccgcacggaggatcat
ccgatcgattatggcagtttcgagggtaatattcccaagggcgaatatggcggcggcacg
gtcatgctgtgggaccggggtagctgggaaccggtgccgggcaagagcgccgacgacctg
aaggacggccatctccatttcatcctgcatggagagcggatgaagggcgaatggctgctg
gtccgcatgaagggacggccgggggagaagcgcgagaactggctgctccgcaagatcgac
gatggggaggcgggaaagggcgacatgctggtcgagcgggcgttgaccagtgtgctgacg
gaccggtccatggcgcagatcgaggcggatgcggaggccacccaatcgttgaagggcagc
gggaaaagggccttttccgacaagatgcgggcggcggaggtgcataacgccaaggtgcgt
tcgaaggccgggcggaagacgggcgggggcgcgcttccccgtttcgtgaagccgcaactg
gcgacgcttgtcgacagcgtgcctgccgggaatgactggctgcatgagatcaaatatgac
ggctatcgcatgctgatcgcggtcgatggcgcgaaagtgaagctgttcacccgcaacggt
ctggactggaccgacaagtttggcccgctggcggaaagcatcgccgcgctggacctgccc
tccgcgctgatcgacggggaggtggtggcgctgggcgaggatggcaatcccagtttttcg
gcgttgcaggcggtgctgaagcgcggccatggcgcgcaacgcgccgatacgccctttcac
ctcttcgccttcgacctgctcttcctggacggcatggatttgaggccgttgcccaccata
gagcgcaaggaaaggctggaggctttgctgcacgacagccagccgcccgtccatgtcgcc
gaccatctgatcggcgcgggggagaagctctaccggtcgctgtgcgacgccgggcaggag
ggcattatcgccaagcggatcgacgccccctatcggggcgaccggacgcgtaactgggtc
aaggtcaaatgcgtgcggcggcaggaattcgttctggtcggctggacgaaaagcaaggcg
aagggtcgccccttctcctccctgctgctcgcccagaatgaagggggggcgatggtgtac
aagggcaaggtcggcaccggcttcgacgcggcggcgatggaggaactggccggggcgatg
gcgccgctggccgtcgacaaggcgccgctggaggtgccgcgagccgaggcgcggggcgtg
caatggatcaagccccggctggtggcggaggtcgccttcgccgaattcaccggcgacggg
cgcgtccggcacggcactttcctgggcctgcggtccgacaagcctgccaaggccgtgcag
ccggaaagggccgaacccgcgcccttgccccagaacggcgtgacgatcagcaatcgcgag
cggatcatctttcccgaagacggcctgaccaaaggcgacctggccgactattatgcgcgt
gtcgctccgctgatgctgccctttgccgcgaaccggccgatcagtctggtccgctgtcct
caggggcgggcgaagaaatgcttctttcagaagcatgacagcgggtcgttcggcgatcat
gtccgccaggtgcccatccgcgagaaagatgaggggtgggaggattatatctatgtcgag
gatgccgacgggctgatggcgtgcgtgcagatgggcaccatcgaattccacggatgggag
agccgcgccgacgcggtggagaagcccgaccggatgatattcgacctcgatccggacgag
ggcatggatttcgccaaagtgcggcaggcggcgcgggacattcgtgatcggctgagcgat
atcgggctcgtctccttcgccatgctttccggcggcaagggggtgcatgtggtggcgccg
ctgacgccgggtcatgactgggacgcgcacaaggatttcgcgtcccgcttcgcgcaggca
ttgagcgcggccgaacccgaccgtttcgtcgcgacgatgagcaaggcgaagcgcaagggg
cgcatcttcatcgactggctgcgaaatcagagggggagcactgccgtgctgccttattcc
gtgcgggctcgtcccggtgcgccggttgcggtgccgatcgattgggatgaattgggtggg
atgaaggatgctcatcccttcggcatccgagatgctgaaaaattgttgcggcgatctcgg
gaactcaacggatgggggttcgcggcgcaggggttgcctggattataa

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