Sphingobium chlorophenolicum: Sphch_3003
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Entry
Sphch_3003 CDS
T01522
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sch
Sphingobium chlorophenolicum
Brite
KEGG Orthology (KO) [BR:
sch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sch03032
]
Sphch_3003
03400 DNA repair and recombination proteins [BR:
sch03400
]
Sphch_3003
Enzymes [BR:
sch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sphch_3003
DNA replication proteins [BR:
sch03032
]
Prokaryotic type
DNA Topoisomerases
Sphch_3003
DNA repair and recombination proteins [BR:
sch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sphch_3003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
CaMKII_AD
Motif
Other DBs
NCBI-ProteinID:
AEG50633
UniProt:
F6F2H1
LinkDB
All DBs
Position
2:101520..102626
Genome browser
AA seq
368 aa
AA seq
DB search
MTKRQKRTETTETNVDPGRKKAEAGLFYASDEEPGFTRRPYRNGWRYFDTSGDRITDRSV
IERINAMAIPPAYTDVWICPDKNGHIQATGRDARGRKQYLYHPRFREMRDSSKYEHMLEF
ARSLPGIRQRIDSDMRRRGLPREKILATIIWLLEATMIRVGNIDYARQNRSYGLTTLNDR
HVRVERDEIRFRFKGKGGKLWNLKLTDRRVARIVRQSQELPGQHLFQYLDDDGERREVTS
GDVNAYLREISGSDITAKDFRTWAGTVLTALTLVEFERTDSEAAAKRNVQAAIRKVATQL
GNTPAICRRCYVHPQVIDSYLTQSLVLEIERKAKRAARSQLAGLRPEEMLVLSFLQSKHC
AAQPTASR
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagcggcaaaagcgcaccgaaacgaccgaaaccaatgtcgatcccggcaggaaa
aaagcagaggcaggcctcttctacgcaagcgacgaggaaccgggcttcacccgccgcccc
tatcgcaacggctggcgctatttcgatacgagcggggaccgcatcaccgaccgcagcgtg
atcgaacggatcaacgccatggccatcccgcccgcttatacggacgtgtggatctgcccg
gacaaaaatggccatatccaggcgaccggccgcgacgcgcggggccgcaagcaatatctc
tatcacccccgcttccgggaaatgcgcgacagcagcaaatatgaacatatgctggaattc
gccagatcgctgcccggcatccgccagcggatcgacagcgacatgcgccgccggggcctg
ccccgcgaaaagatactcgcgacgatcatctggctgctggaggcgacgatgatccgcgtc
ggcaatatcgactatgcgcggcagaatcgcagctatggcctcaccacgctcaacgaccgg
catgtcagggtcgaacgcgacgaaatccgcttccgcttcaagggcaagggcggcaagctg
tggaatctgaagctgaccgaccgccgcgtcgcccgcatcgtgcggcagagccaggaactt
cctggccagcacctcttccaatatctggacgacgatggcgaacggcgcgaagtcacctcc
ggcgacgtcaacgcctatctccgcgaaatcagcggcagcgacatcacggccaaggatttc
cgcacctgggccggaacggtgttgaccgccctgaccctggtcgaattcgaaaggaccgac
agcgaagccgccgcgaaacgcaatgtgcaggccgccatccggaaggtcgcgacccaattg
ggcaacacgcccgccatatgccgccgctgctatgtccacccgcaggtgatcgacagctat
ctgacccaaagcctggtgctggaaatcgaacgcaaggcgaagcgcgccgcgcgcagccag
ctcgcgggccttcgccccgaagagatgctggtcctctccttcctgcaatcgaaacattgc
gcggcgcagccgaccgccagccgctga
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