KEGG   Streptomyces collinus: B446_06290Help
Entry
B446_06290        CDS       T02787                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sci  Streptomyces collinus
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:sci00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    B446_06290 (ligB)
   03410 Base excision repair
    B446_06290 (ligB)
   03420 Nucleotide excision repair
    B446_06290 (ligB)
   03430 Mismatch repair
    B446_06290 (ligB)
Enzymes [BR:sci01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B446_06290 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     B446_06290 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     B446_06290 (ligB)
DNA replication proteins [BR:sci03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    B446_06290 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     B446_06290 (ligB)
DNA repair and recombination proteins [BR:sci03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     B446_06290 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     B446_06290 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     B446_06290 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1516873..1518411
Genome map
AA seq 512 aa AA seqDB search
MLLTRLAEVSREVAATAARSRKTALLAELFRDAEADDVPIVIPYLAGRLPQGRLGVGWKV
LARPVPPAAEPSLTVREVDARLGELGKVSGPGSQAERARLVGELMGAATEGEQRFLLGLL
TGEVRQGALDAVAVEGLARATGADAADVRRAVMLAGSLQTVAQALLADGPGALDRFRLTV
GRPVLPMLAHSASSVAEAVEKLGACAVEEKLDGIRVQVHREGSAVRVHTRTLDDITDRLP
EVTRAALALASERFILDGEVLSFDADGRPRSFQETAGRVGSRVDVARAAEEVPVSPVFFD
LLSVDGVDLLDLPFAERHAMLSDLVPAPMRVRRMVASGPEHIPEAERFLADTLARGHEGV
VAKALDAPYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGRLSNLHLGARTPDGGFA
MLGKTFKGMTDAMLVWQTGRLRELAVEEHGWGVTVRPELVVEIAYDGLQRSSRYPAGVTL
RFARVVRYREDKRPEEADTVEVLLAAHPEVRP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgctcacccggctcgcggaggtttcccgggaggtggccgccacggcggccagatcc
cgcaagaccgccctgctcgcggagctcttccgggacgcggaggcggacgacgtgcccatc
gtcatcccctacctggccggacggctcccgcagggccgcctcggcgtcggctggaaggtc
ctggcccgcccggtgccgcccgccgccgaaccctcgctcaccgtgcgggaggtcgacgcc
cggctcggcgagctgggcaaggtgtccgggcccggctcccaggcggagcgcgcccggctc
gtcggcgagctgatgggcgcggccaccgagggcgagcagcgcttcctgctcggcctgctg
accggcgaggtccggcagggcgcgctggacgcggtcgccgtggagggcctggcccgggcg
accggcgcggacgcggcggacgtacggcgcgcggtgatgctcgccgggtcgctgcagacg
gtggcgcaggcgctgctggccgacgggcccggggcccttgaccggttccggctcaccgtc
ggccgtccggtgctgccgatgctggcccacagcgcctcctcggtcgccgaggcggtggag
aagctcggcgcgtgcgcggtggaggagaagctggacggcatccgcgtgcaggtgcaccgg
gagggcagcgcggtacgggtccacacccgcaccctggacgacatcaccgaccggctgccc
gaggtgacccgagcggctctggcgctggcgagcgagcgtttcatcctggacggcgaggtg
ctctccttcgacgcggacggccggccgcgctccttccaggagaccgcgggccgggtgggc
tcccgggtggacgtggcgcgggcggccgaggaggtgccggtctcccccgtcttcttcgac
ctgctgtcggtggacggcgtggacctgctcgacctgcccttcgccgagcggcacgcgatg
ctcagcgatctggtgcccgccccgatgcgggtccgccgcatggtcgcctccggccccgag
cacatccccgaggcggagcgcttcctcgccgacacgctggcgcgcggccacgagggcgtg
gtcgccaaggcgctggacgccccctacagcgcgggccggcgcggcgcgtcgtggctgaag
gtcaagcccgtgcacacgctggacctggtggtgctggccgccgagtgggggcacggccgc
cgcaccggccggctctccaacctgcacctcggcgcccgcaccccggacggcggattcgcg
atgctcggcaagaccttcaagggcatgaccgacgcgatgctcgtctggcagaccggaagg
ctccgcgaactggccgtcgaggagcacggctggggggtcacggtacgccccgaactcgtc
gtggagatcgcctacgacggtctgcagcgctcctcccgctacccggccggcgtcaccctg
cgcttcgcgcgcgtggtccgctaccgcgaggacaagcggcccgaggaggccgatacggtg
gaggtcctgctggcggctcacccggaggtcaggccgtga

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